Input parameters:
Query = ENSDARP00000010921 (Len=463)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000010921, Len=463):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKF 80
WD40-rpts (_____________________________________WD 1____________________________________)
Query 81 ETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVAVNKMDSTEP 160
WD40-rpts
Query 161 SYSEKRYDEIVKEVSAYIKKIGYSPASVPFVPISGWHGDNMLEPSSNMPWFKGWKLDRKEHHAGGVTLLEALDTIMPPTR 240
WD40-rpts
Query 241 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLRPSMVVTFAPVNITTEVKSVEMHHESLSEALPGDNVGFNVKNVSVKDI 320
WD40-rpts
Query 321 RRGNVCGDSKSDPPQEASGFTAQVIILNHPGQISSGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAA 400
WD40-rpts
Query 401 IVDMIPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKIGGSGRVTKSAQKAQKSSK 463
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000010921 (Len=463):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-79 2.95 236.33 0.03992 22.5% 19.67
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-79 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWK
WD40 Template TGECLRTLS----GHTSGVTSVSFS--------PD----------------GKRLVSGSED-----------GTIKVWD