Input parameters:
Query = ENSDARP00000011140 (Len=187)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000011140, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFKVKILLIGPSECGKTALANFLSDTTESIGADYSPTQGVRILEFESHNLHNGNKSSSCDVELWDCAGDFKFESCWPALM 80
WD40-rpts (_________________WD 1_________________)
Query 81 KDSNGVAVVFNPDVPSHLKEIETWYSAFISSQGLLEGQCLLIAHHKPGSGADTNRPSLAPQLNKLPLIHSNLEEEPEEVR 160
WD40-rpts
Query 161 QEFNKYLGKVMRMLSESQEREEMSIIT 187
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000011140 (Len=187):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 26-65 3.52 259.93 0.01939 22.5% -2.69
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 26-65 TTESIGADYSPTQGVRILEFESHNLHNGNKSSSCDVELWD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD