WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSDARP00000011140    [Danio rerio]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSDARP00000011140 (Len=187)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000011140, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFKVKILLIGPSECGKTALANFLSDTTESIGADYSPTQGVRILEFESHNLHNGNKSSSCDVELWDCAGDFKFESCWPALM 80  
WD40-rpts                               (_________________WD 1_________________)               

Query       81 KDSNGVAVVFNPDVPSHLKEIETWYSAFISSQGLLEGQCLLIAHHKPGSGADTNRPSLAPQLNKLPLIHSNLEEEPEEVR 160 
WD40-rpts                                                                                      

Query      161 QEFNKYLGKVMRMLSESQEREEMSIIT 187 
WD40-rpts                                 



1 WD40-repeats found in QUERY=ENSDARP00000011140 (Len=187):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    26-65       3.52  259.93  0.01939       22.5%     -2.69
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   26-65     TTESIGADYSPTQGVRILEFESHNLHNGNKSSSCDVELWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019