Input parameters:
Query = ENSDARP00000011444 (Len=357)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000011444, Len=357):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSAPKGGLVIFTANSNPSSRELARRIAERLGVELGKVQVYQEANRETRVQIEESVRGKDVFIIQTVSKDVNTTIMELLIM 80
WD40-rpts
Query 81 VYACRTSCARNIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQY 160
WD40-rpts (__________________________________
Query 161 IQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPTVKNIGAIHPSLEIPLLIPKEKP 240
WD40-rpts WD 1__________________________________)
Query 241 PITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGILSSDAPRLIEESAIDEVVVTNTIPHEIQKLQ 320
WD40-rpts
Query 321 CPKIKTVDISMILSEAIRRIHNGESMSYLFRNIGMDD 357
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000011444 (Len=357):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 126-199 3.45 257.37 0.02098 17.5% 26.95
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 126-199 GLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIH
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVS-------------------GSEDGT---------------IKVWD