Input parameters:

  Query = ENSDARP00000011720 (Len=517)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000011720, Len=517):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASFKPTKVLSYPKLGEKVTEETLYWKNYKPPVQIKEFGAVSKIDFSPLPPHNYAVTASTRVHIYGLHSQEPIRNFTRFH 80  
WD40-rpts                                (_________________WD 1_________________)   (__________

Query       81 DTAYGGSFRGDGKLLVAGSEEGLIRLFDIGGRVSLRQFKGHSKAVHATSFLSDGFRVLSGSDDLTCRVWDVASAVELSSI 160 
WD40-rpts      _______WD 2________________)   (_________________WD 3________________)   (______

Query      161 TEHTDYIRAIAPSKLNPDVFVTGSYDHTVKMFDVRSGNSVMTMQHGQPVECVLLYPSEALLVSTGGRYVKVWDLLKGGQQ 240 
WD40-rpts      ___________WD 4_________________)(_________________WD 5_________________)    (__

Query      241 LVSLKNHHKTVTCACLSSSNKLLTASLDRHVKVYNSSYKVVHNFDCASSILSLAVAPDDEAVAVGMTNGVLSIRHRKHKE 320 
WD40-rpts      ______________WD 6________________)(_________________WD 7_________________)   (_

Query      321 EKEALTGRRKRGPSYRFFVKGKNFVPRQDDFLVSKPVRQHLQKYDKQLKRFEVSKALDTALETWTRTTKPEVTVAVIMEL 400 
WD40-rpts      ________________WD 8________________)                                           

Query      401 NRRGTLKNALAGRDEVSLTKILNFLLKHITDPRFSRPLLTVGDIVLDLYQQVIPQSPVVERLLQRLYEILGREAELQQEL 480 
WD40-rpts                                                                                      

Query      481 LQVLGILDTLFASLMPRKEVASFGAAAAAQESQLQAA 517 
WD40-rpts                                           

8 WD40-repeats found in QUERY=ENSDARP00000011720 (Len=517):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    27-66       7.21  412.64  0.00017       10.0%     45.79
  WD 2:  Seg  7    70-108      8.62  470.55  2.8e-05       37.5%     55.35
  WD 3:  Seg 11   112-150      9.84  521.20  5.9e-06       45.0%     55.44
  WD 4:  Seg 15   154-193      7.63  429.91  1.0e-04       27.5%     56.23
  WD 5:  Seg 19   194-233      6.00  362.71  0.00080       27.5%     47.05
  WD 6:  Seg 23   238-275      7.48  423.78  0.00012       32.5%     54.34
  WD 7:  Seg 27   276-315      7.16  410.42  0.00018       15.0%     54.97
  WD 8:  Seg 31   319-357      6.80  395.46  0.00029       22.5%     26.97

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-66     KNYKPPVQI-KEFGAVSKIDFSP-LPPHNYAVTASTRVHIYG
   WD 2   70-108    -QEPIRNFT-RFHDTAYGGSFRG-DGKLLVAGSEEGLIRLFD
   WD 3  112-150    -RVSLRQFK-GHSKAVHATSFLS-DGFRVLSGSDDLTCRVWD
   WD 4  154-193    -AVELSSIT-EHTDYIRAIAPSKLNPDVFVTGSYDHTVKMFD
   WD 5  194-233    VRSGNSVMTMQHGQPVECVLLYP-SEALLVSTG-GRYVKVWD
   WD 6  238-275    -GQQLVSLK-NHHKTVTCACLSS-SNK-LLTASLDRHVKVYN
   WD 7  276-315    SSYKVVHNF-DCASSILSLAVAP-DDEAVAVGMTNGVLSIRH
   WD 8  319-357    -KEEKEALT-GRRKRGPSYRFFV-KGKNFVPRQDDFLVSKPV

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD