Input parameters:
Query = ENSDARP00000011821 (Len=730)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000011821, Len=730):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTKNTVFLSIGETDPSMELGKAKLLRTGLNTLHQAIHPVHGIAWTDGKQVCLTSLFSVEGEPKFGDTNVIGQFEHVLGLF 80
WD40-rpts
Query 81 WGPLCCSGSPALLAVQHKKHVTVWQLQLSALEQNKLLCTQTCEMSEPFPLLSQGCVWHPKMDVLAILTKRDASVLFSVRV 160
WD40-rpts
Query 161 DNRRVKADIKGSGLIHCACWTKDGTRLVVAIGSALHSYTWNDIQKSLVPCSFCPIFDVGGYICAIESTDEAQVAVATELP 240
WD40-rpts (__________________WD 1_________________)
Query 241 LDKICGLNAGMAFDLPNESEGLCRPSAALTVDTDYYLDRRRSCDSERSGHASSGPIDLTNLLAKHRKSDPSPLIHLRKRD 320
WD40-rpts
Query 321 NLTGTGQDSSHLILVTYERKVTTTRKVSIPGILVPDIIAFDPNGHTVAVASNTCNMILVYCITDSSMPNVQQIQLQKNER 400
WD40-rpts
Query 401 PKGVCFFTNKMLLFMIGRQKSNDPAFLPSSNTDKYILRLTAKELVFDEESTTKSESPSQHHGIRRHSENFTKEDRLSIKD 480
WD40-rpts
Query 481 LILPGGSVIVSPSSRRKLIEEVRSSDLSPVASSADFSDRASSASSVTLENYDMDHITRMASLAVAGQASRDSSRPCSPRY 560
WD40-rpts
Query 561 ETSEKLYSDATPPKNSKEKNLEQLTQNMERIFTRFAEVQQCLSEIREFTQNGKKIACSYPSAYEPQYVHITCQKQLSENV 640
WD40-rpts
Query 641 YTDERRPLLLCGGRICLRVVQELFGLTVVEMMHGPMWITLVADADGFVPLTFKHKDELTIRSARRKSPARPPSGADDFPP 720
WD40-rpts
Query 721 ESPKSPSMEK 730
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000011821 (Len=730):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 161-201 3.27 249.57 0.02665 15.0% 48.40
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 161-201 DNRRVKADIKGSGLIHCACWTKDGTRLVVAIGSALHSYTWN
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIK-VWD