Input parameters:

  Query = ENSDARP00000012553 (Len=499)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000012553, Len=499):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCSLAVFPPPLAAGHTHTLMEQHNELQASDPQVDLPSPQFTRDTLKGHSRAESSSKSAFLDQRDTLWRRSAGAWRDAGLY 80  
WD40-rpts                                                                                      

Query       81 GLLDQITNSADEVPRCVSVGSSCLLALLRWSSSFHGSLFPHLTLSSDEMVAEFSQMLDWSDSAVRSFSWHPHTDKFAVAL 160 
WD40-rpts                                                              (______________WD 1_____

Query      161 LDDSIKIYKPHSSTAPTLKHRCQRSVCALQWKPLCGSALAVACQSCLLIWHVDPASLSTRPSSGCAQVLSHPGHSPITSI 240 
WD40-rpts      ________)   (_________________WD 2________________)            (________________

Query      241 AWSPTGSLLVSASPVDTAMMVWDVAAESCVPLRRVGGGGVTFLSWSPDGSRLLAATPSALFRVWETRMWTCERWPCLKGS 320 
WD40-rpts      _WD 3_________________)   (_________________WD 4________________)(______________

Query      321 CQSACWSPDGACLLLSIQGERLIYALSFSDLTGGPKAATVVADLSETSFPGPEGDLTVGGEVCSLSWDPRGERLAVLLKG 400 
WD40-rpts      ______WD 5___________________)                    (____________________WD 6_____

Query      401 DAQSTDHPSVIAVFKTRCSPAFELLPCGFVMGEAGAEPRFMQFHPHFQHGALLTVCWSDGRITHVPFYFSSAGLSDSQRP 480 
WD40-rpts      ______________)         (__________________WD 7__________________)              

Query      481 AALSTADRSISRLYTEDLH 499 
WD40-rpts                         

7 WD40-repeats found in QUERY=ENSDARP00000012553 (Len=499):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   137-169      7.28  415.29  0.00016       22.5%     45.83
  WD 2:  Seg  6   173-211      7.74  434.47  8.7e-05        7.5%     53.47
  WD 3:  Seg 10   224-263      7.12  408.84  0.00019       37.5%     52.54
  WD 4:  Seg 14   267-305      9.75  517.30  6.6e-06       32.5%     53.50
  WD 5:  Seg 18   306-350      5.93  359.70  0.00088       20.0%     54.65
  WD 6:  Seg 24   371-415      4.21  288.49  0.00804       32.5%     38.44
  WD 7:  Seg 29   425-466      4.47  299.30  0.00575       20.0%     47.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  137-169    --------LDWSDSA-VRSFSWHP---HTDKFA--------VALL-DDS----IKIYK
   WD 2  173-211    -ST-APTLKHRCQRS-VCALQWKP---LCGSAL--------AVAC-QSC----LLIWH
   WD 3  224-263    -GC-AQVLSHPGHSP-ITSIAWSP---TGSLLV--------SASPVDTA----MMVWD
   WD 4  267-305    -ES-CVPLRRVGGGG-VTFLSWSP---DGSRLL--------AATP-SAL----FRVWE
   WD 5  306-350    TRMWTCERWPCLKGS-CQSACWSP---DGACLL--------LSIQ-GERLIYALSFSD
   WD 6  371-415    GPE-GDLTVGG---E-VCSLSWDP---RGERLAVLLKGDAQSTDH-PSV----IAVFK
   WD 7  425-466    --L-PCGFVMGEAGAEPRFMQFHPHFQHGALLT--------VCWS-DGR----ITHVP

   WD40 Template    TGE-CLRTLSGHTSG-VTSVSFSP---DGKRLV--------SGSE-DGT----IKVWD