WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000014502 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000014502 (Len=3917) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000014502, Len=3917): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEGSSTDHCQDWSQHHGDTGGVSAPFQTAKEPLPPETIKLDYKNVSGKATSGESPSAPKTEVTPSVKGAVKSTDKDMEH 80
WD40-rpts
Query 81 PKPTPLFETNQTAASSVLQKQSTTNSATQLCKFDSKETMEDVTRDLLKTSKEDDISETLSAGGTKQGISGNSICSGYSSK 160
WD40-rpts
Query 161 QGGQHITPNRGNNTPNDSDKGSCYLTENCSQTQTSTQKTSTLPKTPGIPTLVENIQCVQELSSQYLHINPKMVTLSKETS 240
WD40-rpts
Query 241 TRGDLYCNVAAKEVLCNVSVDEPKLSGHGTCTDTAHVSIMSERSQVMGCGSSDVILKQNDSANQIEISMSSNHQQDGSIL 320
WD40-rpts
Query 321 LTHAENCVTSEGLESDQPNLSDCLVQQLQESIPTDHKLSQIQICLNNTPDIVNEEERQEMNAEALSAVEVKDLIDVGILM 400
WD40-rpts
Query 401 QPDMEDTWLVVSEIDGQPEHAEMEVSDESLVQCPESQSTVAVYECTVPCFTSAAIHSDVKLLLTDKEEEPMETLTQDLQV 480
WD40-rpts
Query 481 QSNLGSHPATLKSTKELTIMSSAQKEVAAIVKQNNDSSPTLAKTMTGLTSTLLDVTLDSVHDQQESVVVENTPGVSLISL 560
WD40-rpts
Query 561 GTIDPKLLILKKDDRPALKQPSSLSARVATKQNSSILDRSPSNESNKVSECLAKTDTAASSNLKDVKLPADHPVSNTLSQ 640
WD40-rpts
Query 641 SWTVSTSNVLSQNSSEKEKLYQSSSSGKMLQKESSADTSLSTSVKLHNSESHLTPSPGGVWGPVSDIVPLENQSLDGKPL 720
WD40-rpts
Query 721 QDLMSLGGALVLEQQQLPDKLLSTAQDSQHTILEPLDASVEESSDGEADSSLEVQNEDSNAVTNPAENKVCQWIAGKVTA 800
WD40-rpts
Query 801 ASTPSTSPVPCSSPSPSSSDWIRSHTGRASPIRNSHGKNMPSTSSQGSQSEQTTTPKSTPKHTDLAELAKHEAEIEHRTL 880
WD40-rpts
Query 881 ALKREGFWSLKRLSRITEPVRPKDHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVMRHHEELRQKEERAKREEQAKL 960
WD40-rpts
Query 961 RRVASSIAKEVRAFWSSVEKVVQYKQQSRLEEKRKKALDLQLDFIVGQTERYSDLLSQSLQGAPVQSSDIAAASKQSQPN 1040
WD40-rpts
Query 1041 PVDEDDRDFEPPCEEEDDEETIEVEEQQEGNDAETQKREIELLREESTLPLDQLLSTLTLPQDVESEEEESDTSSLTVED 1120
WD40-rpts
Query 1121 EDKEFSANEEDAEDEEETIEAQEVIEGEGDHTEELDDLAREGEMSMEELLEKYRGAYASDFEEPSASADSSEESEGTEVE 1200
WD40-rpts
Query 1201 AEEETEGEDSADDSGSSSDSQAAVDTEEEDEHEDVQESDDEDDGGEGMEVLLREGDQSPSVPTSPRPKKEISHIAATAES 1280
WD40-rpts
Query 1281 LQPKGYTLATTKVKTPIPFLLHGTLREYQHIGLDWLVTMNEKKLNGILADEMGLGKTIQTIALLAHLACVKGNWGPHLII 1360
WD40-rpts
Query 1361 VPTSVMLNWEMELKRWCPGFKILTYYGSQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKSWRYLILDEAQNIKN 1440
WD40-rpts
Query 1441 FKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVL 1520
WD40-rpts
Query 1521 RPFLLRRIKADVEKQMPKKYEHVVRCRLSKRQRFLYDDFMAQASTRETLASGHFMSVINILMQLRKVCNHPNLFDPRPIQ 1600
WD40-rpts
Query 1601 SPFITKDIIYSTASLVQQALETSPFERCDLSMFDLVGLEHRVSRYQADVFLPQRKVTHQLIQEIMESPDPPPRPKPVRMK 1680
WD40-rpts
Query 1681 VNRMLQPLPKTDGRSAANSPRPACPPTTTTIQTPKPLITEVTTSQAPSQPATQVCPVTPVTALRAPLAPSTIPSAPAVRP 1760
WD40-rpts
Query 1761 PAPQSVTVRPSAPSTITAAPPPQPQPPQPSSIMTQRVLLSPDMQARLPSGEVVSIAQLASLAGRPVSSSQGSKPVTFQLQ 1840
WD40-rpts
Query 1841 GNKLTLSGTPLHQVPVPQPRPIQGNVMHLVSSSGQHHLISQPAQVAVLHTVSQSVSSSANPHPASTTPTCSGLAVPFTTA 1920
WD40-rpts
Query 1921 QVATSMVGGPGIVKIVVRQAPSKEGGSIPTLAVPPSPRPAPPQSVTLHPHGSPSPVLRAPTASQLPQRPPVYAAPPRTVA 2000
WD40-rpts
Query 2001 SSQTPPARPVLRVLQGPPPPPAPEPPVTKANTPCEDSNEVITLRMSTPKPTSSSQSSSSASHRPRIQPPAPPRSPFYMSW 2080
WD40-rpts
Query 2081 LADTRKAQRDDRISQIMRINELHCTAKPVYGREVLDFLTFLPGPCPSPARPVVNNWSYSGYSSCLIAQSQHTSNILERNT 2160
WD40-rpts
Query 2161 FLREEIHNSEERLRLLSDVIDRFVFVIPPVEARPVTMHSCHPPPSLRHQQAVFSSDLSSYVSPLTHTLHRIQSNMRTYFP 2240
WD40-rpts
Query 2241 DLRLIQYDSGKLQTLHLLLRRLKAEGHRVLIFTQMTRMLDVLEQFLNYHGHIYLRLDGSTRVEQRQALMDRFNADRRIFC 2320
WD40-rpts (_________________________WD 1__
Query 2321 FILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2400
WD40-rpts _______________________)
Query 2401 GNFTTAFFKQQTIRELFDVTEGEKKEAEQSVPQSDDEESINKQKTTILEQALCRAEDEEDIVAASQAKAEQVAELAEFNE 2480
WD40-rpts
Query 2481 NIPLDDGDSRDQEEEELSKAEQEIAALVEQLTPIERYAMNFLEASLEDICKEELKQAEEQVEAARKGLDQAKEEGLKLHQ 2560
WD40-rpts
Query 2561 SSDSDEEDSVHPSTDEPTPSRRPRKHKEKGAPSTRVSGRLRGTPADDISLTQTSPDRGRRTAWLNSERSISQTPGSTQKS 2640
WD40-rpts
Query 2641 PLNREVPEKLRSGPRGRCTTKESASLENQTIPTNQQLIDSTTLSPAMRDSYPKISVPSPHQQSISPSSSVPSAAASPSLD 2720
WD40-rpts
Query 2721 RNSCGHLSSSTVACREDSEDQKGEARSENVQSRDRRASASSDSICSPEHHSEQECQLSLSPTLASPNSRSPRKRQSAEWE 2800
WD40-rpts
Query 2801 ILKGLPEDSPSAKVLRKLPGRLVTVVEEKEPKRRRRGVSGSGGLHEGSSEEPEKTEPVQDTVPHSSDGSTQTFKVSPPKS 2880
WD40-rpts
Query 2881 VLTSLQSSPPPTPREQEQTSSPLPYSCIGRGHNPCSPTHHSPDMPVLRNLPVRRRLETESRLAAQLGEQFLGRGRGVDRK 2960
WD40-rpts
Query 2961 SASTQKRIETSTDKDGSAPCDSSLMSRRKRGRPPKTPPRALELSEENTPVIEKTSPERSPPHSPKRKRGRPRKDSTTTTG 3040
WD40-rpts
Query 3041 SPPSSPSAGAPSSQEPNLSRSNVMPETLPTDSKISPISSPTLCPTSPLNAAEVSSLPKPDSEIIQTTTSVLLSTSPSETG 3120
WD40-rpts
Query 3121 VDSHGDTYASLNTISSCNDSDNSTLVSLPHSTSTAAPYETCTDSSPTLQFTYSFREPPVTTVSICAEEIAHTSVLSDASE 3200
WD40-rpts
Query 3201 ITAYSESLTVSTAAVEAEENSVTDNQQVNNLQPSNTSTQVTSQCVDETDPTTDLPQTTLEPIYSVAESSTPTDQPSIQPS 3280
WD40-rpts
Query 3281 SPPALTSEIEPEASSSILEAPETSAVQTVSTVQRSLPQSEQISPPSQLQTTAMEAVSDSPSQQISSSSLQSLSATNPVTT 3360
WD40-rpts
Query 3361 DSLSTLSTDADSSQSQNIVVETMIDNHEGPHSPKEKVETEEEEVLTEEEVVTEEEEQEVVTETEVVTETEKMETDSVGED 3440
WD40-rpts
Query 3441 DAGEKDDILSQPKKRRLECLPKDQTPSASGVASSDIESHDVQKSDGPDKPLEEEEPEDKEPRSSIRTRSISRQSSQETVR 3520
WD40-rpts
Query 3521 SSSPSSVSSCGTRSSRSKKGAENKNPVKRKRSEIKSEKKKSKEGSDKKHQSNSSSSSSDSEDSNSVKRCLTRSAQKKLEK 3600
WD40-rpts
Query 3601 EGMIAKNDESSTRQKARSDKKAKSTNSTEGESSGEVCSRVTRKSTGPQSNTLASPEPEVLGKRCSALNAAAKLLAMRARG 3680
WD40-rpts
Query 3681 PDTPSSSPKNKTAAHQSKTLTSEKVSKPKVNPGQDSPKVSNNKAESGKQPLGQSTESPQSSSSARSTRQRPGSLVPPLEV 3760
WD40-rpts
Query 3761 ERVKKEEKKKPSDQKEEGEDEIRETRSSRGHSACSSISSERGVGSSRSRSSSNSSQRTHSLSSQSTDPIRTRSRATSSGS 3840
WD40-rpts
Query 3841 DTERSKSIQRKNDGGRGRESRKENKSQKLDKAELSAGSGDGTPDRVLRSVAALAAAHALTPACNTRSSTSQKRHSKT 3917
WD40-rpts
 1 WD40-repeats found in QUERY=ENSDARP00000014502 (Len=3917): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 30 2289-2344 2.77 229.12 0.04970 22.5% 32.91Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2289-2344 HGHIYLRLDGSTRVEQRQALMDRFNADRRIFCFILSTRSGGVGVNLTGAD-TVVFYD WD40 Template TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |