Accession: ENSDARP00000014790 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000014790 (Len=1930)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000014790, Len=1930):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSEDDRDDFEHRSVMQEEDDLEEELSENDAPKVKKKKKAKKSSRESKGSKRNRSRREEIGISSPEPGEGPDLDDGEED 80  
WD40-rpts                                                                                      

Query       81 RSESEGSDYTPGRKKKKRASTAKDKKRNSSAAERNSAASKRREPEEEEDEDDDDSEPKSSSQLLDTWGMEDIDHIFTEED 160 
WD40-rpts                                                                                      

Query      161 YRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPLRGSATSLVAAASVETPPETPTSASAAQISPEST 240 
WD40-rpts                                                                                      

Query      241 PAAPVRKAKTKEGKGPNARKKSKPAPKPQEKKVKTKKVAPLKIKLGGFNSKRKRSSSEEDDVDVDSDFDDGSINSVSVSN 320 
WD40-rpts                                                                                      

Query      321 GSNSRSSRSSAKKKPKKKTKKDEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKM 400 
WD40-rpts                                                                                      

Query      401 GIQWEAREDASEGEEDNEAGGEAEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCTCPSMK 480 
WD40-rpts                                                                                      

Query      481 GKVQKILTWRWTEPPPPTPVPRPSDLPTDAPDPTPLAGRPEREFFVKWQNMSYWHCSWVTELQLEIHCQVMFRNYQRKND 560 
WD40-rpts                                                                                      

Query      561 MDEPPPIDFGGEGEEEKSDKRKKKDPTYARMEEKYYRFGIKMEWMVIHRILNHSVDKKNNCHYLIKWRDLTYDQATWELE 640 
WD40-rpts                                                                                      

Query      641 DMDLPDYDTYKLQYWNHRELMMGDEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLNW 720 
WD40-rpts                                                                                      

Query      721 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVI 800 
WD40-rpts                                                                                      

Query      801 RENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQH 880 
WD40-rpts                                                                                      

Query      881 KLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRV 960 
WD40-rpts                                                                                      

Query      961 ELSPMQKKYYKFILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQ 1040
WD40-rpts                                                                                      

Query     1041 KMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLA 1120
WD40-rpts                                      (__________________________WD 1_________________

Query     1121 TADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELD 1200
WD40-rpts      ________)                                                                       

Query     1201 DILKFGTEELFKDEGEGENKEGQEDSSVIHYDDKAIDRLLDRNQDATDDTELQSMNEYLSSFKVAQYVVKDEEEAEEEVQ 1280
WD40-rpts                                                                                      

Query     1281 REIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDGQSDYSVASEEGDEDFDE 1360
WD40-rpts                                                                                      

Query     1361 RSEANSRRPNRKGLRNDKDKPLPPLLARVSGNIEVLGFNARQRKAFLNAVMRYGMPPQDAFTTQWLVRDLRGKSEREFKA 1440
WD40-rpts                                                                                      

Query     1441 YVSLFMRHLCEPGADGAESFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMMELSENKTTSTAGSHPD 1520
WD40-rpts                                                                                      

Query     1521 SPSKTPTTGTPSDTQPNTPAPDGVPKAEDAGKDADKEKVKNGDGEKEANENKNSEVIAVPDEDGRAASASEEKEKGKEEK 1600
WD40-rpts                                                                                      

Query     1601 EKTPESSSEAEKADGKQEEKEEENAKSGDSEEKTDDTDKPKGSEADKETSDAKGEKKDDEPEKMDTTPVTDEKKGQKDEK 1680
WD40-rpts                                                                                      

Query     1681 DSGKTEEAGKLPNGESAKDSAAGAGIEERKKAKTRFMFNIADGGFTELHSLWQNEERAATVTKKTNEIWHRRHDYWLLAG 1760
WD40-rpts                                                                                      

Query     1761 IIQHGYARWQDIQNDVRFAILNEPFKGEINRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMTEDPSHPSMALNT 1840
WD40-rpts                                                                                      

Query     1841 RFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLASRG 1920
WD40-rpts                                                                                      

Query     1921 PDTQSQQVQQ 1930
WD40-rpts

1 WD40-repeats found in QUERY=ENSDARP00000014790 (Len=1930):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15  1073-1129     2.90  234.49  0.04222       20.0%     30.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1073-1129   EGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATAD-TVVIYD

   WD40 Template    TGECLRTLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD