WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000015825 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000015825 (Len=756) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000015825, Len=756): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRHDVITSSAGGKMAAVQDGPMEVDAEKETKPEILSDGTANPSGNTGGGTLSSSPLTAAPAAGAPKPEDQQTLLAVLQFL 80
WD40-rpts
Query 81 KRSKLAESVEILRREAGLAEELEDSHTDAGAGGKDGDAGDTKTLLSRVSIAGAAAPQSTLTPIPAKSGDDQPDVSVVLSA 160
WD40-rpts
Query 161 YSQQGDPSLYKVYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDLRVLCG 240
WD40-rpts
Query 241 LTKKEHMKGNEALLDFRTSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEAR 320
WD40-rpts (__________________________________WD 1________________________
Query 321 REVNKVKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYM 400
WD40-rpts _________)
Query 401 KESTKRIRLGPETLPSICFYTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVL 480
WD40-rpts (_________________WD 2________________)(_____________WD 3________
Query 481 ERIMDEKTSSESKILHGHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPFGYYFVSGG 560
WD40-rpts ____) (_________________WD 4________________) (_________________WD 5________
Query 561 HDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFL 640
WD40-rpts ________) (_________________WD 6________________) (_________________WD 7____
Query 641 ASGSTDGRVLLWDIGHGLMIAELKGHTGTIYALKFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDDFTAATGHIHLPDN 720
WD40-rpts ____________) (_________________WD 8________________)
Query 721 SQELLLGTYHSKSTAVIHLHFTRRNLLLAAGSYNSQ 756
WD40-rpts
 8 WD40-repeats found in QUERY=ENSDARP00000015825 (Len=756): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 258-330 4.10 284.16 0.00919 15.0% 28.63 WD 2: Seg 6 416-454 7.95 443.06 6.6e-05 30.0% 52.94 WD 3: Seg 10 455-485 4.26 290.72 0.00750 12.5% 41.98 WD 4: Seg 13 489-527 10.02 528.42 4.7e-06 47.5% 54.13 WD 5: Seg 17 531-569 8.90 482.50 2.0e-05 35.0% 53.54 WD 6: Seg 20 573-611 9.28 498.16 1.2e-05 35.0% 48.54 WD 7: Seg 24 615-653 10.71 557.07 1.9e-06 47.5% 54.77 WD 8: Seg 28 657-695 10.11 532.09 4.2e-06 40.0% 51.63Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 258-330 TSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFY WD 2 416-454 -SICFYTFL---------------------------------NAYQGLTAVDFTDDSSLIAGGFADSTVRVWS WD 3 455-485 ------------------------------------------VTPKKLRKVKSAADLNLIDKESDDVLERIMD WD 4 489-527 -SSESKILH---------------------------------GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWS WD 5 531-569 -FTCLVGYK---------------------------------GHNYPVWDTQFSPFGYYFVSGGHDRVARLWA WD 6 573-611 -YQPLRIFA---------------------------------GHLADVTCTRFHPNSNYVATGSSDRTVRLWD WD 7 615-653 -GNCVRIFT---------------------------------GHKGPIHSLAFSPNGKFLASGSTDGRVLLWD WD 8 657-695 -GLMIAELK---------------------------------GHTGTIYALKFSRDGEIIASGSIDNTVRLWD WD40 Template TGECLRTLS---------------------------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |