Input parameters:

  Query = ENSDARP00000017443 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000017443, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEMEQLRKEAEKLKDDITAARKTVQDLTLQDHVAGTAVVGRVQLKTRKTLRGHLAKIYAMHWGTDSKLCVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VWDSYTTNKVHAIPLKSSWVMTCSYAPSGNMVACGGLDNMCSIYNLKAKDGNVKVMRELAAHTGYLSCCRFLSDSEIITS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDCTCVLWDIETGSQKTVFAGHLGDCMSLAVSPDFNTFISGACDFTAKLWDIREGQCRQTFGGHESDINAIGFFPNGNA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 VITGSDDASCKLYDLRSDQELITYQDSSIMCGVTSIAPSLSGRLILAGYDDFNCNIWDSLKSERVGVLSGHDNRVSCIGV 320 
WD40-rpts      _____________)   (__________________WD 6_________________)   (_________________W

Query      321 TPDGMACCTGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSDARP00000017443 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83       9.83  520.76  6.0e-06       35.0%     54.61
  WD 2:  Seg  7    87-125      8.94  483.85  1.9e-05       17.5%     56.98
  WD 3:  Seg 11   133-170      7.09  407.46  0.00020       27.5%     50.47
  WD 4:  Seg 15   174-212      9.88  522.83  5.6e-06       35.0%     55.13
  WD 5:  Seg 19   216-254     10.66  554.94  2.1e-06       35.0%     53.67
  WD 6:  Seg 23   258-298      8.15  451.51  5.1e-05       30.0%     57.03
  WD 7:  Seg 27   302-340     10.16  534.32  3.9e-06       35.0%     50.24

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     LKTRKTLRGHL--AKIYAMHWGTDSKLCVSASQDGKLIVWD
   WD 2   87-125    TNKVHAIPLKS--SWVMTCSYAPSGNMVACGGLDNMCSIYN
   WD 3  133-170    VKVMRELAAHT--GYLSCCRFLSDSE-IITSSGDCTCVLWD
   WD 4  174-212    GSQKTVFAGHL--GDCMSLAVSPDFNTFISGACDFTAKLWD
   WD 5  216-254    GQCRQTFGGHE--SDINAIGFFPNGNAVITGSDDASCKLYD
   WD 6  258-298    DQELITYQDSSIMCGVTSIAPSLSGRLILAGYDDFNCNIWD
   WD 7  302-340    SERVGVLSGHD--NRVSCIGVTPDGMACCTGSWDSFLKIWN

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD