Input parameters:

  Query = ENSDARP00000017678 (Len=597)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000017678, Len=597):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGPGLPDSLVLEIFLHLPHKAVLSAGLTCHQWFAVSRDEFLWKELFYSYYRIPRTVPRHPAAVSWYREFKRLYDCIPC 80  
WD40-rpts                                                                                     (

Query       81 VEVQTLKEHHDQVLHLAFSHRGHRFSSCSKDCTVKLWDTEQSDGTISLVHSCSMRQYNWGYTQFSQFNADDTLLLVSGVY 160 
WD40-rpts      _________________WD 1________________)(__________________________WD 2___________

Query      161 LGPHHSSAGEIAVFSLDNYTLLSRVRNKPYDVFGCWLNETHLISGNLHWIGNMTSCSVLWLNNAFQGIESENVNVVKRLF 240 
WD40-rpts      ______________)           (_______________WD 3______________)                   

Query      241 KIQNINASTIRTVMVAHCRRHDSPDLLLDYEAQAQRTQQHQPLFFDLGNTDSEEEGEDDAEEERGEKRLAAHLPSLKPSG 320 
WD40-rpts                                                                                      

Query      321 LHHVLHGCQSIATRERELETKVARLMGSRRTKAPELNLVSPSNVGEGEDMTYLLFTTGSLTYSPHQIGIKRIMPDQMTTC 400 
WD40-rpts                     (_________________WD 4________________)                          

Query      401 GPVLGEERSSEEFFDSLDHVIDIHGHIIGMGLSPDHRYLYVNSRAWPAGCVISDPMSPPPIAEEIDLHVIDLKSLREERR 480 
WD40-rpts                                      (_________________WD 5________________)    (____

Query      481 SLRAHRAFTPNDECFFIFLDVSRDFVASGAEDKHGYIWDRHYNICLARLQHDDVVNSVAFSPADQELLLSASDDSTIKVW 560 
WD40-rpts      _______________WD 6___________________)   (_________________WD 7________________

Query      561 RSPRMVRLSQAPRPPSRAHKLLSSLLGHRSINVNGKP 597 
WD40-rpts      )                                    

7 WD40-repeats found in QUERY=ENSDARP00000017678 (Len=597):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    80-118      9.13  491.85  1.5e-05       37.5%     49.91
  WD 2:  Seg  5   119-175      4.18  287.27  0.00834       25.0%     42.73
  WD 3:  Seg 10   187-221      3.46  257.45  0.02092       10.0%     39.24
  WD 4:  Seg 18   336-374      5.18  328.73  0.00231        5.0%     17.76
  WD 5:  Seg 24   433-471      3.86  273.98  0.01258       15.0%      6.80
  WD 6:  Seg 27   476-519      6.70  391.44  0.00033       25.0%     46.72
  WD 7:  Seg 31   523-561      7.76  435.39  8.4e-05       50.0%     55.45

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   80-118    -CVEVQTLK---------EHHD-----QVLHLAFSH----RGHRFSSC--------SKDCTVKLWD
   WD 2  119-175    TEQSDGTISLVHSCSMRQYNWG-----YTQFSQFNA----DDTLLLVSGVYLGPHHSSAGEIAVFS
   WD 3  187-221    ------------------NKPY-----DVFGCWLNETHLISGNLHWIG--------NMTSCSVLWL
   WD 4  336-374    -RELETKVA---------RLMG-----SRRTKAPEL----NLVSPSNV--------GEGEDMTYLL
   WD 5  433-471    SPDH-RYLY---------VNSR-----AWPAGCVIS----DPMSPPPI--------AEEIDLHVID
   WD 6  476-519    -REERRSLR---------AHRAFTPNDECFFIFLDV----SRDFVASG--------AEDKHGYIWD
   WD 7  523-561    -NICLARL----------QHDD-----VVNSVAFSP---ADQELLLSA--------SDDSTIKVWR

   WD40 Template    TGECLRTLS---------GHTS-----GVTSVSFSP----DGKRLVSG--------SEDGTIKVWD