Input parameters:

  Query = ENSDARP00000017736 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000017736, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLKRMHIRYYPPGIFLDYEKGGQLRTKCIDLLNLTPETDVEELVLEIRAAEPLITSSCVEQVKLLICKLQEKVSQKDER 80  
WD40-rpts                              (________________________WD 1________________________)  

Query       81 KFYLFRALQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCK 160 
WD40-rpts       (_________________WD 2________________)   (_________________WD 3_______________

Query      161 LWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFD 240 
WD40-rpts      __)   (_________________WD 4________________)   (_________________WD 5__________

Query      241 HTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIAT 320 
WD40-rpts      ______)   (_________________WD 6________________)   (_________________WD 7______

Query      321 ASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFNYEGD 400 
WD40-rpts      __________)   (_________________WD 8________________)   (_________________WD 9__

Query      401 TIITGSKDNTCRIWH 415 
WD40-rpts      ______________)

9 WD40-repeats found in QUERY=ENSDARP00000017736 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-78       4.96  319.67  0.00306       12.5%     40.19
  WD 2:  Seg  7    82-120      9.81  520.01  6.1e-06       35.0%     51.69
  WD 3:  Seg 11   124-163      9.26  497.21  1.2e-05       42.5%     55.86
  WD 4:  Seg 15   167-205     10.36  542.49  3.0e-06       37.5%     56.48
  WD 5:  Seg 19   209-247     10.29  539.84  3.3e-06       45.0%     56.09
  WD 6:  Seg 23   251-289      9.78  518.51  6.4e-06       35.0%     53.65
  WD 7:  Seg 27   293-331     10.09  531.31  4.3e-06       40.0%     57.06
  WD 8:  Seg 31   335-373      9.98  527.06  4.9e-06       35.0%     57.51
  WD 9:  Seg 35   377-415     10.04  529.54  4.5e-06       35.0%     47.04

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-78     LRTKCIDLLNLTPETDVEELVLEIRAAEPLITSSC-VEQVKLLICKLQEKVSQKD
   WD 2   82-120    -FYLFRALQAHILPLT--------------NVAFN-KSGSCFITGSYDRTCKIWD
   WD 3  124-163    -GEELHTLEGHRNVVY--------------AIAFNNPYGDKVATGSFDKTCKLWS
   WD 4  167-205    -GKCFYTFRGHTAEIV--------------CLAFN-PQSTLVATGSMDTTAKLWD
   WD 5  209-247    -GEEVSTLAGHFAEII--------------SLCFN-TTGDRLVTGSFDHTAILWD
   WD 6  251-289    -GRKVHVLSGHRGEIS--------------CVQFN-WDCSLIATASLDKSCKVWD
   WD 7  293-331    -GQCLATLLGHNDEVL--------------DVCFN-YTGQLIATASADGTSRVFS
   WD 8  335-373    -FQCLCQLEGHKGEIS--------------KVCFN-AQGSRVLTASVDKTSRVWC
   WD 9  377-415    -GACLQVLEGHSDEIF--------------SCAFN-YEGDTIITGSKDNTCRIWH

   WD40 Template    TGECLRTLSGHTSGVT--------------SVSFS-PDGKRLVSGSEDGTIKVWD