Input parameters:

  Query = ENSDARP00000017859 (Len=334)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000017859, Len=334):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEEKKPDTEATKTQPASAASASQSKSAPVKPNYTLKFTLAGHTKAVSSVKFSPSGEWLASSSADKLIKIWGAYDGKFE 80  
WD40-rpts      (______________WD 1_____________) (_________________WD 2________________)   (___

Query       81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160 
WD40-rpts      ______________WD 3________________)   (_________________WD 4________________)   

Query      161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240 
WD40-rpts      (_________________WD 5________________)   (_________________WD 6________________

Query      241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320 
WD40-rpts      _)   (__________________WD 7__________________)   (__________________WD 8_______

Query      321 LENDKTIKLWKSDC 334 
WD40-rpts      __________)   

8 WD40-repeats found in QUERY=ENSDARP00000017859 (Len=334):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       6.41  379.56  0.00048        7.5%     11.20
  WD 2:  Seg  3    35-73      10.31  540.73  3.2e-06       47.5%     54.69
  WD 3:  Seg  7    77-115     10.87  563.67  1.6e-06       45.0%     57.77
  WD 4:  Seg 11   119-157     10.94  566.39  1.4e-06       42.5%     57.01
  WD 5:  Seg 15   161-199     10.94  566.36  1.4e-06       45.0%     56.21
  WD 6:  Seg 19   203-242      9.51  507.53  9.0e-06       42.5%     52.93
  WD 7:  Seg 23   246-287      8.85  480.37  2.1e-05       37.5%     57.08
  WD 8:  Seg 27   291-331      8.44  463.43  3.5e-05       35.0%     51.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------M-ATEEKKPDTEATK---TQPASAASAS--QSKSAPVKP
   WD 2   35-73     YTLKFTL-AGHTKAVSSVKFS---PSGEWLASSS--ADKLIKIWG
   WD 3   77-115    GKFEKTI-SGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
   WD 4  119-157    GKCLKTL-KGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
   WD 5  161-199    GKCLKTL-PAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
   WD 6  203-242    GQCLKTLIDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
   WD 7  246-287    GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGS--EDNMVYIWN
   WD 8  291-331    KEIVQKL-QGHTDVVISTACH---PTENIIASAALENDKTIKLWK

   WD40 Template    GECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD