Input parameters:

  Query = ENSDARP00000018924 (Len=722)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000018924, Len=722):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVSSVNNVKIYNLSHGKSLPEWLSDRKKRVLQKKDVDIQRRIELIQDFEMPTVCTSIRVSRDGQYILAAGTYKPRVRCY 80  
WD40-rpts                                              (__________________WD 1_________________

Query       81 DTYQLSLKFERCLDSDVVTFDILSDDYSKLVFLHIDRYVEFHSQHGHYYKTRIPKFGRDFSYHSPSCDLYFVGASSEVFR 160 
WD40-rpts      )(__________________WD 2__________________)                                     

Query      161 LNLEQGRFLNSLQTDAAEMNVCDINPVHQLFAAGTLEGRVDCWDPRVRTRVAVLDCALSSITDNTEVEGLPSVSALKFND 240 
WD40-rpts           (_________________WD 3________________)           (__________________WD 4__

Query      241 SLGLAVGTSTGQILVYDLRSSRPLLVKDHYYGLPIKSLHFHNSLDLVLSADSKIIKMWNKDNGKVFSSIEPQANINDVCL 320 
WD40-rpts      ________________)(__________________WD 5__________________)                     

Query      321 YPASGMLFTANEDPKMNTFYIPALGPAPRWCSFLDNLTEELEENPESTIYDDYKFVTRKDLESLGLAHLIGSPLLRAYMH 400 
WD40-rpts                                                                                      

Query      401 GFFMDIRLYHKVKTMVNPFAYEEYRKDKIRQKIEESRAQRVQLKKLPKVNKELALKLMEEDTELTNKKKKKKANVAGNLL 480 
WD40-rpts                                                                                      

Query      481 MDERFKVMFENPDYQVDERSEEFRLLNPIISTVAERRRKSLLEEEQEQAEEEQEPEGRGSSEDDSSDEDDKGWVQEVREQ 560 
WD40-rpts                                                                                      

Query      561 RRLLRMEERERSYIQRQERRQQDRNTRLQSSDTHTQQSHGAQQPRFYQIKSGEEFRSFSDVSRKQKTHKASLEERLQRLE 640 
WD40-rpts                                                                                      

Query      641 KSDTLSLNDTAVGSKQLTFTLKKTEKQRFQQQAERDHHEERRRIRRSAGHLHSNRGGGRGRGGGRGRGGGRGRGGGRGRR 720 
WD40-rpts                                                                                      

Query      721 PF 722 
WD40-rpts        

5 WD40-repeats found in QUERY=ENSDARP00000018924 (Len=722):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    41-81       4.18  287.48  0.00829       20.0%     42.03
  WD 2:  Seg  6    82-123      3.66  266.05  0.01606       20.0%     46.03
  WD 3:  Seg 13   166-204      6.38  378.21  0.00050       20.0%     38.40
  WD 4:  Seg 18   216-257      3.67  266.36  0.01591       30.0%     27.23
  WD 5:  Seg 21   258-299      2.86  232.60  0.04471       17.5%     43.56

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-81     RRI---ELIQDFEMPTV--CTSIRVSR--DGQYILAAGTYKPRVRCYD
   WD 2   82-123    TYQ---LSLKFERCLDSDVVTFDILSD--DYSKL-VFLHIDRYVEFHS
   WD 3  166-204    -GR---FLNSLQTDAAE--MNVCDINP--VHQLF-AAGTLEGRVDCWD
   WD 4  216-257    CAL---SSITDNTEVEG--LPSVSALKFNDSLGL-AVGTSTGQILVYD
   WD 5  258-299    LRSSRPLLVKDHYYGLP--IKSLHFHN--SLDLV-LS-ADSKIIKMWN

   WD40 Template    TGE---CLRTLSGHTSG--VTSVSFSP--DGKRL-VSGSEDGTIKVWD