Input parameters:
Query = ENSDARP00000019433 (Len=192)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000019433, Len=192):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGKQNSKLRPEVIQDLLDNTDFTEHEILEWYKGFLRDCPSGALSMDEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTI 80
WD40-rpts (__________________________________________________________________WD 1_________
Query 81 DFREFIIALSVTSRGRLDQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNR 160
WD40-rpts ________________________________________________________)
Query 161 DGKLSLEEFVEGAKNDPSIVRLLQCDPSSAGQ 192
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000019433 (Len=192):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-137 2.99 238.17 0.03775 27.5% -5.84
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-137 MGKQNSKLRPEVIQDLLDNTDFTEHEILEWYKGFLRDCPSGALSMDEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGRLDQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMK
WD40 Template TGECLRTLS-----------GHT--------------SGVTSVS----------FSPDGKRL-----------------VS-------------GS---------------EDGTIK-----------------VWD