Input parameters:

  Query = ENSDARP00000019506 (Len=336)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000019506, Len=336):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYHKEKSIQIKSSASALYNNLSVLRIAPRCLTYFTVVHANVVNMVSASWDGLNYSHRQLQSKEGNVATSSSLIMQAAWCV 80  
WD40-rpts                                                                     (_______________W

Query       81 LPSRDLLVLTSQKGIQMYESDGSIMVYWHALETPETPTAKAVFARGIAAVREKFICVGVSSGSVLVFDVPSKGSNITLSE 160 
WD40-rpts      D 1_______________)          (_________________WD 2________________)       (____

Query      161 VLEEHKEAITDMASECSGNMECIGDLVSADDSGLLCVWKSGEDFQLLNKIPGFDTSCSSVKLWKGTVIAGYGTGQIRLYE 240 
WD40-rpts      _______________WD 3___________________)(__________________WD 4_________________)

Query      241 AVTGILHAEVNAHARWIYSLDIAPFTGLLLSAAEDSWVRVWHLSLTPETNSVEMEHMYNECVTDMQICGAKFCDGDGYAF 320 
WD40-rpts         (_________________WD 5________________)             (________________WD 6____

Query      321 AVTGYDLSEIIRYTQA 336 
WD40-rpts      ___________)    

6 WD40-repeats found in QUERY=ENSDARP00000019506 (Len=336):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    64-99       5.67  349.08  0.00123       20.0%     37.33
  WD 2:  Seg 11   110-148      5.23  330.85  0.00216       17.5%     29.77
  WD 3:  Seg 15   156-199      7.33  417.40  0.00015       25.0%     47.64
  WD 4:  Seg 19   200-240      7.23  413.44  0.00017       22.5%     53.85
  WD 5:  Seg 23   244-282      9.49  506.88  9.2e-06       25.0%     54.60
  WD 6:  Seg 28   296-332      3.00  238.61  0.03724        7.5%     44.52

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-99     -GN---VATSSSLIMQAAWCVLPSRDLLV-----LTS---QKGIQMYE
   WD 2  110-148    ALE---TPETPTAK-AVFARGIAAVREKF-----ICVGVSSGSVLVFD
   WD 3  156-199    -IT---LSEVLEEHKEAITDMASECSGNMECIGDLVSADDSGLLCVWK
   WD 4  200-240    SGEDFQLLNKIPGFDTSCSSVKLWKGT-------VIAGYGTGQIRLYE
   WD 5  244-282    -GI---LHAEVNAHARWIYSLDIAPFTGL-----LLSAAEDSWVRVWH
   WD 6  296-332    --H---MYNECVTDMQICGAKFCDGDGYA-----FAVTGYD-LSEIIR

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKR-----LVSGSEDGTIKVWD