Input parameters:
Query = ENSDARP00000019685 (Len=313)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000019685, Len=313):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVY 80
WD40-rpts (_________________WD 1________________) (__________________WD 2_____
Query 81 SSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGL 160
WD40-rpts ____________) (_________________WD 3________________)(_________________WD 4___
Query 161 IFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKG 240
WD40-rpts ______________)(_____________________WD 5____________________) (______________
Query 241 VILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMAFWLPTIDD 313
WD40-rpts ____WD 6__________________) (_________________WD 7_________________)
7 WD40-repeats found in QUERY=ENSDARP00000019685 (Len=313):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 11-49 9.14 492.14 1.4e-05 20.0% 54.36
WD 2: Seg 6 53-93 7.75 434.64 8.6e-05 27.5% 50.28
WD 3: Seg 10 97-135 10.24 537.56 3.5e-06 37.5% 54.42
WD 4: Seg 14 136-175 8.01 445.34 6.2e-05 22.5% 50.89
WD 5: Seg 18 176-222 8.71 474.61 2.5e-05 27.5% 56.34
WD 6: Seg 22 226-267 9.13 491.72 1.5e-05 37.5% 56.29
WD 7: Seg 26 271-310 7.76 435.33 8.4e-05 25.0% 45.73
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 11-49 -FR-------VAKVFRE-NSDK---INCFDFSSNGETVI--SSSDDDSIVLYD
WD 2 53-93 -GK-------PKRTLYS-KKYG---VDLIRYTHAANTVVYSSNKIDDTIRYLS
WD 3 97-135 -NK-------YIRYFPG-HNKR---VVALSMSPVDDTFI--SGSLDKTIRLWD
WD 4 136-175 LRS-------PNCQGLM-HLQG---KPVCSFDPEGLIFA--AGVNSEMVKLYD
WD 5 176-222 LRSFDKGPFATFKLQYE-RTCE---WTGLKFSNDGKLIL--VSTNGGTLRVLD
WD 6 226-267 -GA-------VLHSFGG-YNNSKGVILEASFTPDSQFIM--IGSEDGKIHVWN
WD 7 271-310 -GM-------KVALLDGKHTGP---VTCLQFNPKFMTFA--SACSNMAFWLPT
WD40 Template TGE-------CLRTLSG-HTSG---VTSVSFSPDGKRLV--SGSEDGTIKVWD