Input parameters:

  Query = ENSDARP00000019743 (Len=776)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000019743, Len=776):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNAILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGVRGLPNLPLTQQQLQAQHLSHAAHGPVALPPHPSGL 160 
WD40-rpts                                                                                      

Query      161 QPPGIPPVTGSGSGLLALGALGSQPHLPVKDEKNHHDLEHRAWISFRSDNCEVPVILMNNSISPSDSLRTTSEKHRGSSD 240 
WD40-rpts                                                                                      

Query      241 YSLDSKKRKVEDKDSMSRYDSDGDKSDDLVVDVSNEDPATPRGSPAHSPPENGIDKPRPAKKDTPNSPASVASSGSTPSS 320 
WD40-rpts                                                                                      

Query      321 KNKEHGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRPILGKPPMEALAAPALRTPLTYPTPFAMMSHHEMNGSLTNP 400 
WD40-rpts                                                                                      

Query      401 GVYAGLHISPQMSAAAAAAYGRSPMAGFEHPHMRAPGLPASLTSISGGKPAYSFHVSADGQMQPVPFPPDALIGPGIPRH 480 
WD40-rpts                                                (_______________WD 1______________)   

Query      481 ARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 560 
WD40-rpts      (________________WD 2_______________)(_____________________WD 3_________________

Query      561 TIWDLASQTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTG 640 
WD40-rpts      ___)     (_________________WD 4________________)   (_________________WD 5_______

Query      641 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFV 720 
WD40-rpts      _________)(__________________WD 6_________________)  (_________________WD 7_____

Query      721 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 776 
WD40-rpts      ___________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSDARP00000019743 (Len=776):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   443-477      3.42  255.87  0.02197       20.0%     25.16
  WD 2:  Seg  7   481-517      5.88  357.47  0.00095       27.5%     48.16
  WD 3:  Seg 11   518-564      7.41  420.75  0.00013       25.0%     48.25
  WD 4:  Seg 14   570-608      8.58  469.22  2.9e-05       30.0%     55.85
  WD 5:  Seg 18   612-650      9.85  521.58  5.8e-06       35.0%     54.55
  WD 6:  Seg 22   651-691      6.95  401.67  0.00024       25.0%     51.71
  WD 7:  Seg 26   694-732      8.43  462.69  3.6e-05       30.0%     53.14
  WD 8:  Seg 30   733-773      7.55  426.43  0.00011       32.5%     55.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  443-477    -------------TSI-SGGKPAYSFHVSADGQMQPVPFPPDALIGPGI
   WD 2  481-517    -AR-------QINTL--SHGEVVCAVTISNPTRHV-YTGG-KGCVKIWD
   WD 3  518-564    ISQPGSKSPVSQLDCL-NRDNYIRSCKLLPDGRTL-IVGGEASTLTIWD
   WD 4  570-608    -PR-------IKAELT-SSAPACYALAISPDAKVC-FSCCSDGNIAVWD
   WD 5  612-650    -QT-------LVRQFQ-GHTDGASCIDISHDGTKL-WTGGLDNTVRSWD
   WD 6  651-691    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWL-AVGMESSNVEVLH
   WD 7  694-732    -KP-------DKYQLH-LHESCVLSLKFAYCGKWF-VSTGKDNLLNAWR
   WD 8  733-773    TPY------GASIFQS-KESSSVLSCDISADDKYI-VTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD