Input parameters:

  Query = ENSDARP00000023040 (Len=433)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000023040, Len=433):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEASESDEDDMEGEEQNGDGQEKVYVPGLQPLQPGEELEMDHSAYRMYHECQTGAPCLSFDVVLDGEGDRREQFPLSMVL 80  
WD40-rpts                                                                                      

Query       81 CAGTQADTALSNRLIVMRMHNLQGTEKKKDEDKSSDEESDEDEDDEDEDKKPQLELAMMPHYGGINRVRVTQRGEQTLAA 160 
WD40-rpts                                                                (______________WD 1___

Query      161 VWSEKGQVEIFDLRLQLEAVHNSTAMSAFIKQEKEATPLFSFAGHMSEGFAIDWSPKVPGRMVSGDCKKNIHVWEPQEGG 240 
WD40-rpts      ___________)                       (_________________WD 2_________________)(____

Query      241 TWKIDQRPFSSHSKSVEDLQWSPTEATVFASCSVDQSIRIWDIRAPPNSMLSANEAHSSDVNVISWNRTEPFILSGGDDG 320 
WD40-rpts      _________________WD 3____________________)     (_________________WD 4___________

Query      321 LLKVWDLRQFQSGRPVASFKQHSAPVTSVQWSPVDSSVFAASGADDVISQWDLSVESCDMGGQAEDVKQLPPQLLFLHQG 400 
WD40-rpts      _____)      (_________________WD 5_________________)                            

Query      401 QKEVKELHWHPQIPGVLISTALSGFNIFRTISV 433 
WD40-rpts                                       

5 WD40-repeats found in QUERY=ENSDARP00000023040 (Len=433):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   139-172      3.74  268.99  0.01467       20.0%     43.02
  WD 2:  Seg  9   196-235      5.72  350.84  0.00116       32.5%     51.12
  WD 3:  Seg 13   236-282      6.60  387.34  0.00037       32.5%     46.39
  WD 4:  Seg 16   288-326      8.45  463.79  3.5e-05       32.5%     50.29
  WD 5:  Seg 20   333-372      7.31  416.61  0.00015       32.5%     52.24

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  139-172    --------------MPHYGGINRVRVTQ-RGE-QTLAAVWSEKGQVEIFD
   WD 2  196-235    -AT------PLFSFAGHMSEGFAIDWSP-KVPGR--MVSGDCKKNIHVWE
   WD 3  236-282    PQEGGTWKIDQRPFSSHSKSVEDLQWSPTEAT-V--FASCSVDQSIRIWD
   WD 4  288-326    -NS------MLSANEAHSSDVNVISWNR-TEP-F--ILSGGDDGLLKVWD
   WD 5  333-372    -GR------PVASFKQHSAPVTSVQWSPVDSS-V--FAASGADDVISQWD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGK-R--LVSGSEDGTIKVWD