Input parameters:

  Query = ENSDARP00000023313 (Len=1036)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000023313, Len=1036):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDEELPSTSREAHAEAEEEDPPFLLGPPPKAVVKESLADPEYEEKRKTDRANRFEFLLKQTELFAHFIQPASQKSPTSP 80  
WD40-rpts                                                                                      

Query       81 LKVKMGRPRIKQDEKQNLLSVGDNRHRRTEQEEDEELLSESRKADNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLYEN 160 
WD40-rpts                                                                                      

Query      161 GINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMMP 240 
WD40-rpts                                                                                      

Query      241 GEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPD 320 
WD40-rpts                                                                                      

Query      321 VFNSASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSA 400 
WD40-rpts                                                                                      

Query      401 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDY 480 
WD40-rpts                                                                                      

Query      481 CMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 560 
WD40-rpts         (__________________________WD 1_________________________)                    

Query      561 RKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQNKLGKDEMLQMIRHGATHVFASKDSELTDEDIDTILE 640 
WD40-rpts                                                                                      

Query      641 RGAKKTAEMNERMQNLGESSLRNFTVDTGATETSLYNFEGEDYREKQKVGVFIFGHLIFVHIAVLKSINLSLIEWIEPPK 720 
WD40-rpts                                                                                      

Query      721 RERKANYAVDAYFREALRVSEPRAPKAPRPPKQPNIQDFQFFPPRLFELLEMEILYYRKTIGYKVPRSPDIPNSAQVQKE 800 
WD40-rpts                                                                                      

Query      801 EQRKIDEAEPLSPEETEEKEKLLTQGFTNWNKRDFNQFIKANEKYGRDDIDNIAREVEGKTPEEVMEYSAVFWERCNELQ 880 
WD40-rpts                                                                                      

Query      881 DIEKIMAQIERGEARIQRRISIKKALDVKIARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKEYVYEELRQ 960 
WD40-rpts                                                                                      

Query      961 CVRNAPQFRFDWFIKSRTAMELQRRCNTLISLIEKENMEIEEKERAEKKRRTPKGQSAQKRKAEVSSEKKEKKART 1036
WD40-rpts                                                                                  

1 WD40-repeats found in QUERY=ENSDARP00000023313 (Len=1036):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   484-540      2.83  231.63  0.04605       20.0%     29.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  484-540    RGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATAD-VVILYD

   WD40 Template    TGECLRTLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD