Input parameters:
Query = ENSDARP00000023867 (Len=402)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000023867, Len=402):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 GGVTLYCYNTESGRIKQLDKFAESHSSSPVKPVMMDKDSFILPKDFPELRNDTFLRAARGEEIEHIPVWCMRQAGRYLPE 80
WD40-rpts
Query 81 FRESRAGKDFFETCRSPEACCELTLQPLRRFPFDAAIIFSDILVVPQAMGMEVQMCPGKGPTFPEPLKEPEDLQRLKTQV 160
WD40-rpts
Query 161 DVYSELDYVFKAITLTRHKIEGKVPLIGFTGAPWTLMSYMIEGGGSATHSKAKRWLYRYPEASHKLLSQLTDVIVEYLLG 240
WD40-rpts
Query 241 QVKAGAQALQVFESHTGCLGPVEFKEFSLPYLRDIARRVKDKIKESGLDNVPMIVFAKDGHYGLEDLSESAYEVVGLDWT 320
WD40-rpts (_________________________________________WD 1______________________________
Query 321 IDPRSARVRTGGKVSLQGNMDPCALYGTKESISEIVRRMLEGFGTKGYIANLGHGLYPDMDPENVGAFVEAVHNHSRQLL 400
WD40-rpts ___________)
Query 401 KR 402
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000023867 (Len=402):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 245-332 2.92 235.11 0.04143 22.5% 14.87
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 245-332 GAQALQVFESHTGCLGPVEFKEFSLPYLRDIARRVKDKIKESGLDNVPMIVFAKDGHYGLEDLSESAYEVVGLDWTIDPRSARVRTGG
WD40 Template TGECLRTLSGHTSGVT--------------------------------SVSFSPDG---------KRLVSGSEDGTIK-------VWD