Input parameters:

  Query = ENSDARP00000024168 (Len=600)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000024168, Len=600):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVY 80  
WD40-rpts                (_________________WD 1________________)   (__________________WD 2_____

Query       81 SSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGL 160 
WD40-rpts      ____________)   (_________________WD 3________________)(_________________WD 4___

Query      161 IFAAGVNSEMVKLYDLRSFDKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKG 240 
WD40-rpts      ______________)        (_________________WD 5________________)   (______________

Query      241 VILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMLVLGAYREPRHSWDKD 320 
WD40-rpts      ____WD 6__________________)   (_________________WD 7_________________)          

Query      321 YDPVLLPLLDPLEPCYILYRLDSKNAQGYEWLFISWSPDQSPVRQKMLYAATRATVKKEFGGGHVKDEMFGTVEEDICLQ 400 
WD40-rpts                                                                                      

Query      401 GYLRHITSCSAPAPLTVAEQELQRIKITEGRVKQAEAKRALKQLAERRINYIQLKLDTEKETIDLVHTSPTDIRDLPCRI 480 
WD40-rpts                                                                                      

Query      481 PLDTPRYHFFLYKHSHEGDYLESVVFIYSMPGYSCSIKERMLYSSCKSRLLDEVERDFHLEVAKKLEIDSGEELTEEYLY 560 
WD40-rpts                                                                                      

Query      561 DEVHPKQHAHKQAFAKPRGPAGKRGNKRLIKGGGENGGNS 600 
WD40-rpts                                              

7 WD40-repeats found in QUERY=ENSDARP00000024168 (Len=600):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-49       9.16  492.92  1.4e-05       20.0%     51.98
  WD 2:  Seg  6    53-93       7.73  433.82  8.9e-05       27.5%     48.79
  WD 3:  Seg 10    97-135     10.38  543.26  3.0e-06       37.5%     53.03
  WD 4:  Seg 14   136-175      8.06  447.80  5.7e-05       22.5%     51.04
  WD 5:  Seg 18   184-222      8.74  475.80  2.4e-05       27.5%     54.15
  WD 6:  Seg 22   226-267      9.21  495.22  1.3e-05       37.5%     56.69
  WD 7:  Seg 26   271-310      6.77  394.23  0.00030       25.0%     48.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-49     -FRVAKVFRE-NSDK---INCFDFSSNGETVI--SSSDDDSIVLYD
   WD 2   53-93     -GKPKRTLYS-KKYG---VDLIRYTHAANTVVYSSNKIDDTIRYLS
   WD 3   97-135    -NKYIRYFPG-HNKR---VVALSMSPVDDTFI--SGSLDKTIRLWD
   WD 4  136-175    LRSPNCQGLM-HLQG---KPVCSFDPEGLIFA--AGVNSEMVKLYD
   WD 5  184-222    -FATFKLQYE-RTCE---WTGLKFSNDGKLIL--VSTNGGTLRVLD
   WD 6  226-267    -GAVLHSFGG-YNNSKGVILEASFTPDSQFIM--IGSEDGKIHVWN
   WD 7  271-310    -GMKVALLDGKHTGP---VTCLQFNPKFMTFA--SACSNMLVLGAY

   WD40 Template    TGECLRTLSG-HTSG---VTSVSFSPDGKRLV--SGSEDGTIKVWD