Input parameters:

  Query = ENSDARP00000024391 (Len=329)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000024391, Len=329):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNTEATKAATAAAD 80  
WD40-rpts        (___________________WD 1__________________)   (_________________WD 2__________

Query       81 FTAKVWDAVTGDEVLTLAHKHIVKSVNFTQDSNYLLTGGNDKVLRIYDLSKPEAEPQEIAGHTSAIKKALWCNNDQQILS 160 
WD40-rpts      ______)   (________________WD 3________________)(___________________WD 4________

Query      161 AADDKTIRLWDKNTNEAVKTLSFDASVSSMEYIPDGETLVITYGRTIAFYNAHSLDLIKTVDAPASIHSASLHPDKDFFV 240 
WD40-rpts      __________)   (________________WD 5_______________)   (________________WD 6_____

Query      241 AGGDDFKLYKYDYTTKEEMESYKGHFGPVHCVRFSPDGELYASGSEDGTLRLWQTAVGKTYGLWKCVLPEELSSENSEAL 320 
WD40-rpts      ___________)   (_________________WD 7________________)                          

Query      321 YCPPAEIKA 329 
WD40-rpts               

7 WD40-repeats found in QUERY=ENSDARP00000024391 (Len=329):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-45       8.53  466.87  3.2e-05       35.0%     51.96
  WD 2:  Seg  5    49-87       9.70  515.23  7.1e-06       27.5%     54.89
  WD 3:  Seg  9    91-128      8.42  462.62  3.6e-05       32.5%     55.08
  WD 4:  Seg 13   129-171      9.28  497.81  1.2e-05       25.0%     52.13
  WD 5:  Seg 17   175-211      6.27  373.82  0.00057       30.0%     52.75
  WD 6:  Seg 21   215-252      7.90  440.95  7.1e-05       25.0%     54.23
  WD 7:  Seg 25   256-294     10.48  547.51  2.6e-06       45.0%     52.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-45     MRQ---TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQ
   WD 2   49-87     -GD---WIGTFLGHKGAVWGATLN---TEATKAATAAADFTAKVWD
   WD 3   91-128    -GD---EVLTL-AHKHIVKSVNFT---QDSNYLLTGGNDKVLRIYD
   WD 4  129-171    LSKPEAEPQEIAGHTSAIKKALWC---NNDQQILSAADDKTIRLWD
   WD 5  175-211    -NE---AVKTL-SFDASVSSMEYI---PDGETLVI-TYGRTIAFYN
   WD 6  215-252    -LD---LIKTVDAPAS-IHSASLH---PDKDFFVAGGDDFKLYKYD
   WD 7  256-294    -KE---EMESYKGHFGPVHCVRFS---PDGELYASGSEDGTLRLWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFS---PDGKRLVSGSEDGTIKVWD