Input parameters:

  Query = ENSDARP00000024476 (Len=727)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000024476, Len=727):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 VCVMASAVERTDDLVREYLIYRGFTSTLKHLDSEIKTDKEKGFRVDKIMDQLQLLIQSCDLTGLKEYWANLERRLFCRLE 80  
WD40-rpts                                                                                      

Query       81 DVYKPTVSKLRTSLYRFYLIHTVQVKNVEKTQEFFQKQALELQAQAEWRDWFSLPFIPAPEQNPSFSAYFSRQWADTFLV 160 
WD40-rpts                                                                                      

Query      161 SLHNFLSVLFQCMPLPALLSFDSEVQRITSLQEDNEQLRQTVFALQGESRLKKDEQMVHHKLPPYVQHMDRLGDTELDLV 240 
WD40-rpts                                                                                      

Query      241 SSQRNVNMATPSRNFFSTFLPQGRRAPGRTAPGPQSSPTQSALGRKDAAASMQSSKAKDKEVKPPSVSSMTAELSTSHPR 320 
WD40-rpts                                                                                      

Query      321 QRRHQDHEKERKELFSKHAAQGSEKKTDSDPDTQTEAPPDQTDSANQTRVCDVGGAGAEQPFIKLSQEEYGEHHSSIMHC 400 
WD40-rpts                (_________________WD 1________________)                  (____________

Query      401 RVDCSGRRVASLDVDGVVKVWAFNPIMQTKATIMSKSPLLSLEWAAKPDRLLLLGSGVGTVKLYDTDAKKCLYEMTIDDV 480 
WD40-rpts      ___WD 2______________)   (_________________WD 3_________________)(______________

Query      481 HPRILSLACSPSGTSFVCSAAAHSGAVMESEPRGSAPVSGQLLLWDTKTVKQQLQFALEPGPVAINCTAFNHNGNLLVTG 560 
WD40-rpts      _____WD 4___________________)                      (_________________WD 5_______

Query      561 AADGIIRLFDMQRYESALSWKAHDGEVYSVEFSYDENTVFSIGEDGKFVQWNIHRCGVKQSEYSLSQDAVGPFVLSGYSG 640 
WD40-rpts      _________)   (_________________WD 6________________)                         (__

Query      641 YKQVQVPRGRLFAFDSEGQHVLTCSSTGGNIYRLNKAEAGLESVLSLAGHKAPVVTVDWCSAMDCGTCLTASMDGKIKLS 720 
WD40-rpts      _______________WD 7________________)(____________________WD 8___________________

Query      721 TLLAQKP 727 
WD40-rpts      )      

8 WD40-repeats found in QUERY=ENSDARP00000024476 (Len=727):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   331-369      4.31  292.78  0.00704        7.5%     18.58
  WD 2:  Seg  5   388-422      7.76  435.14  8.5e-05       25.0%     42.50
  WD 3:  Seg  8   426-465      6.97  402.45  0.00023       22.5%     53.01
  WD 4:  Seg 12   466-509      7.24  413.75  0.00017       20.0%     43.11
  WD 5:  Seg 16   532-570      8.51  466.16  3.2e-05       25.0%     52.74
  WD 6:  Seg 20   574-612      8.93  483.57  1.9e-05       32.5%     54.96
  WD 7:  Seg 26   638-676      3.89  275.55  0.01198        7.5%     27.34
  WD 8:  Seg 30   677-721      7.25  414.27  0.00016       30.0%     50.13

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  331-369    -R---K----ELFSKHAAQGSEKKTDSDP--D-TQTEA--PPDQTDSANQTR
   WD 2  388-422    ------------EEYGEHHSSIMHCRVDC--S-GRRVA--SLDVDGVVKVWA
   WD 3  426-465    -I---M----QTKATIMSKSPLLSLEWAA--KPDRLLL--LGSGVGTVKLYD
   WD 4  466-509    TD---AKKCLYEMTIDDVHPRILSLACSP--S-GTSFV--CSAAAHSGAVME
   WD 5  532-570    -Q---Q----LQFALEPGPVAINCTAFNH--N-GNLLV--TGAADGIIRLFD
   WD 6  574-612    -Y---E----SALSWKAHDGEVYSVEFSY--D-ENTVF--SIGEDGKFVQWN
   WD 7  638-676    ----------YSGYKQVQVPRGRLFAFDS--E-GQHVLTCSSTGGNIYRLNK
   WD 8  677-721    AEAGLE----SVLSLAGHKAPVVTVDWCSAMD-CGTCL--TASMDGKIKLST

   WD40 Template    TG---E----CLRTLSGHTSGVTSVSFSP--D-GKRLV--SGSEDGTIKVWD