Input parameters:

  Query = ENSDARP00000024623 (Len=694)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000024623, Len=694):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALTNTTITSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVA 80  
WD40-rpts              (__________________WD 1_________________)   (_________________WD 2______

Query       81 GSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGK 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 WLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFN 240 
WD40-rpts      ______________)   (_________________WD 5________________)   (________________WD 

Query      241 PDGSCLYSGSENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSGSVIQGLIQDKP 320 
WD40-rpts      6________________)   (________________WD 7________________)  (_________________W

Query      321 IPAPSSALGTTLRRNYERPTTSCTGQEMKQSSEADRRSPEGERRSPSSEDEKEDKESSAEITNPEDYKEIFQPRSVISRT 400 
WD40-rpts      D 8_________________)(_______________WD 9_______________)                       

Query      401 PPKTTEPFPAPLEHSFSESVLEKPGPVVKIVTPVIDRAGQLKGPITSSTPVQRVEPTVIAAAPRPVAVVTTSASSPSRPV 480 
WD40-rpts                                                                                      

Query      481 VNTTKPKPSTGIILSTRNEPIGLNAGDFLSHARNAKASAMGDEEALAQIRKGHDTMCVMLSSRSKNLDSVRSVWASGDVK 560 
WD40-rpts                                                                                      

Query      561 TSLDSAVSMNDLSIVVDVLNIINLKPSLWKLDLCTSILPQIEELLQSRYESYVQTGCMSLKLILKRFWPLISDTLNAPPS 640 
WD40-rpts                                                                                      

Query      641 VGVDITREERHQKCKACYKQLKNLSNVVKNRAEQVGRHGSTFRELQLLMAPLDY 694 
WD40-rpts                                                            

9 WD40-repeats found in QUERY=ENSDARP00000024623 (Len=694):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-49       7.28  415.18  0.00016       30.0%     47.33
  WD 2:  Seg  5    53-91      10.10  531.84  4.2e-06       37.5%     54.69
  WD 3:  Seg  9    95-133     10.64  554.36  2.1e-06       47.5%     51.24
  WD 4:  Seg 13   137-175     10.67  555.31  2.0e-06       47.5%     55.40
  WD 5:  Seg 17   179-217     10.18  535.06  3.8e-06       42.5%     54.42
  WD 6:  Seg 21   221-258      7.69  432.26  9.3e-05       37.5%     54.05
  WD 7:  Seg 25   262-299      5.11  325.73  0.00254       15.0%     51.32
  WD 8:  Seg 29   302-341      7.38  419.50  0.00014        5.0%     31.08
  WD 9:  Seg 33   342-377      5.93  359.59  0.00089       20.0%     13.18

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-49     TSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWA
   WD 2   53-91     -PNCIMSLTGHTSAVGCIQFN-SSEERVVAGSLSGSLRLWD
   WD 3   95-133    -AKILRTLMGHKASISSLDFH-PMGEYLASGSVDSNIKLWD
   WD 4  137-175    -KGCVFRYKGHTQAVRCLAFS-PDGKWLASASDDSTVKLWD
   WD 5  179-217    -GKMITEFTSHTSAVNVVQFH-PNEYLLASGSADRTVKLWD
   WD 6  221-258    -FNMIGSSEGETGVVRSVLFN-PDGSCLYSGS-ENTLRVYG
   WD 7  262-299    -DRCFDVVHVGWGKVSDLAIS-NNQMIAVSYSHT-NVSWYV
   WD 8  302-341    LNRVKKSGSVIQGLIQDKPIP-APSSALGTTLRRNYERPTT
   WD 9  342-377    ----SCTGQEMKQSSEADRRS-PEGERRSPSSEDEKEDKES

   WD40 Template    TGECLRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD