Input parameters:
Query = ENSDARP00000025026 (Len=1553)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000025026, Len=1553):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 NSSFLQREDPDLPVCVERTVLVWLPLAFLWICSPFHFRSFCQKSAKAPASALYYCKQVVAGLLLLTAVAELAVTLGEDFG 80
WD40-rpts
Query 81 PSSDEDAQKNPAVLYTNPVLFAVSWIVVMLCQESMRHRLMCVDSGSLFMFWLLQVVCAVFQFQTLLREALSQGISDVPRF 160
WD40-rpts
Query 161 CLFYISYGLQIIALVLSAIADVSPEAKKVAETNPEAKATFLSRITFNWFNSMVWKGFKRPLVQEDMWDLNKNDSTHFICQ 240
WD40-rpts
Query 241 TFEDVMAKELKKARNNLQKKKSKKRKTVDAEGQNGLAKGVSQDVLVMETETEKESKKKKKKKQKDSDSDYPQSWLVTTIV 320
WD40-rpts
Query 321 KSFKGVLLESALFKLLQDLLSFASPQLLKLMIAFTQNKDSYAWTGYLYAVLLVLVAFVQSVVLQQYFQRCFILGMKVRTA 400
WD40-rpts
Query 401 IMAAVYKKALVVSNDSRKESTAGEIVNLMSADAQRFNDVTNFIHLLWSCPLQIALSIAFLWIELGPSVLSGLLVMVLMVP 480
WD40-rpts
Query 481 INGWLATKSRQFQMQNMKFKDSRMKIVNDLLNGIKILKYYAWETSFEAQVQEIREKELKVMRKFAYLSSVSTFIFSCAPA 560
WD40-rpts
Query 561 LVSLATFAVFVSVSPDNILDAEKAFTSISLFNILRFPLAMLPQLISIMVQTSVSKKRLEKFLSGDDLDTTTVTHDSSITA 640
WD40-rpts
Query 641 AVSMTNGTYAWERDTEPVLKQVSLDIKPGRLVAVVGAVGSGKTSLVSALLGELHSIKGNININGSVAYVPQQAWIQNATL 720
WD40-rpts
Query 721 KDNILFGSSVDEERYQSVIKACALGPDLDLLPGRDQTEIGEKGINLSGGQKQRVSLARAVYSSADVYLLDDPLSAVDSHV 800
WD40-rpts
Query 801 GKHLFEKVIGPNGLLRDKTRILVTHGISFLPYVDEIVVLVHGVVSEIGSYESLRASKGAFSEFLETYGKDESNKDNDKKA 880
WD40-rpts
Query 881 AAAQTPVYEEIETLPEGLETQADGSPEDIVSSTLKRENSLRHSQRHSKRNGSVKVRKNSSLRAQKDPEDKKGQRLIEKEM 960
WD40-rpts
Query 961 METGRVKFSVYLQYLSAMGWWYVGFSFVFYFIQNVAVIGQNLWLSDWTDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGF 1040
WD40-rpts
Query 1041 LVFFGTILLADGSISASRTLHTSLLTNILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVI 1120
WD40-rpts
Query 1121 CLATPIFTAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFLKHNEHTIDQNLKS 1200
WD40-rpts
Query 1201 VYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNSGLVGLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYA 1280
WD40-rpts
Query 1281 EIQNEAPWVTSVRPPDDWPSAGNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADG 1360
WD40-rpts (________________________WD 1__________________
Query 1361 RILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKEYVRGLPTGLEHEVSEGGEN 1440
WD40-rpts _____)
Query 1441 LSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQSTIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFD 1520
WD40-rpts
Query 1521 SPNELLSKPGHFSSMAEDAGIRREEEQSQSYVF 1553
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000025026 (Len=1553):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 1314-1366 2.84 231.90 0.04568 27.5% -17.79
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1314-1366 RPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGRILIDD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSG-------------SEDGTIKVWD