Input parameters:

  Query = ENSDARP00000026454 (Len=474)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000026454, Len=474):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFKRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSAFCAVNPKFVALIVEASGGGAFMVLPLHKTGRIDKAYPTVCGH 80  
WD40-rpts                                                                            (_________

Query       81 TGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLVTSMSEPVVVLEGHSKRVGVVTWHPTARNVLLSAGCDNMIIIWN 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGESMITLEDHHPDIIYSICWNRNGSLICTACKDKKIRVIDPRKEEIIAEKDKAHEGARPMRAIFLSDGKVFTTGFSR 240 
WD40-rpts         (_________________WD 3_________________)   (___________________WD 4__________

Query      241 MSERQLALWDPENIDEPVAVHEMDTSNGVLLPFYDPDTNVVYLCGKGDSSIRYFEITDEAPFVHYLNTFTTKEPQRGMGY 320 
WD40-rpts      _________)(____________________WD 5___________________)                         

Query      321 MPKRGLDVNKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPDAPLEAEEWFEGKNGDPVLISLKHGYIPGKN 400 
WD40-rpts                                                                                      

Query      401 RDLKVVKKNILDNKMSKNTENTTPAHKTATSTPSIKSEAKLEEVLKEIKSLRELVSSQEKRIGKLEEQLSKMDI 474 
WD40-rpts                                                                                

5 WD40-repeats found in QUERY=ENSDARP00000026454 (Len=474):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    71-110      7.60  428.49  0.00010       35.0%     46.95
  WD 2:  Seg 10   121-160      6.83  396.74  0.00028       30.0%     50.53
  WD 3:  Seg 14   164-203      7.11  408.24  0.00020       27.5%     55.45
  WD 4:  Seg 18   207-250      3.66  265.96  0.01611       22.5%     48.31
  WD 5:  Seg 22   251-295      4.27  290.91  0.00745       17.5%     40.80

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    -DKAYPTVC----G-HTGP--VLDIDWCPHNDQV-I-ASG---SEDCTVMVWQ
   WD 2  121-160    -SEPVVVLE----G-HSKR--VGVVTWHP-TARNVL-LSA---GCDNMIIIWN
   WD 3  164-203    -GESMITLE----DHHPDI--IYSICWNR-NGSL-I-CTA---CKDKKIRVID
   WD 4  207-250    -EEIIAEKD----K-AHEGARPMRAIFLS-DGKV-F-TTGFSRMSERQLALWD
   WD 5  251-295    PENIDEPVAVHEMD-TSNG--VLLPFYDP-DTNV-VYLCG---KGDSSIRYFE

   WD40 Template    TGECLRTLS----G-HTSG--VTSVSFSP-DGKR-L-VSG---SEDGTIKVWD