Accession: ENSDARP00000026825 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000026825 (Len=452)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000026825, Len=452):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEDGESTKINHSFLRDYVTEADVISTVEFNQTGDLLATGDKGGRVVIFQRETESKGESEELGESGEYNVYSTFQSHEPD 80  
WD40-rpts                (_________________WD 1_________________)                          (___

Query       81 FDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKVSERDKRPEGYNLKDEEGRIKDISTVTSLRVPVLKPTDLM 160 
WD40-rpts      ________________WD 2___________________)     (_________________WD 3_____________

Query      161 VEVRPRRVFANGHTYHVNSISVNSDGETYLSADDLRINMWHLDITDRSFNIVDIKPANMEDLTEVITAAEFHPQHCHLFV 240 
WD40-rpts      ____)    (_____________WD 4_____________)            (_________________WD 5_____

Query      241 YSSSKGTLRLCDMRESALCDRHSKIFEEPEDPGNRSFFSEIISSVSDVKFSHSGRYLLTRDYLTVKVWDLHMEKGPVETY 320 
WD40-rpts      ___________)               (__________________WD 6__________________)           

Query      321 QVHEYLRSRLCSLYENDCIFDKFECVWNSTDSVIMTGAYNSFFRMFDRETGRGVTLEAWRESSKPRAVLRTRRVYTGGRR 400 
WD40-rpts        (____________________WD 7___________________)  (_________________WD 8_________

Query      401 RRGDVGVDSLDFTKKILHMAWHPAENIIAIAATNNLYIFQDRVKPENQCEET 452 
WD40-rpts      _______)

8 WD40-repeats found in QUERY=ENSDARP00000026825 (Len=452):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       7.45  422.51  0.00013       20.0%     44.69
  WD 2:  Seg  5    77-120      4.80  313.08  0.00375       17.5%     45.04
  WD 3:  Seg  8   126-165      6.54  384.77  0.00041       12.5%     18.71
  WD 4:  Seg 10   170-201      5.79  353.75  0.00106       30.0%     43.58
  WD 5:  Seg 14   214-252      6.14  368.46  0.00067       22.5%     38.18
  WD 6:  Seg 18   268-309      6.62  388.10  0.00037       35.0%     39.26
  WD 7:  Seg 22   323-367      5.10  325.45  0.00256        7.5%     42.68
  WD 8:  Seg 25   370-408      5.05  323.34  0.00273       10.0%     12.03

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-50     NHS---FLRDYVT--EADV-----ISTVEFNQ-TGD--LLATGDKGGRVVIFQ
   WD 2   77-120    HEP---DFDYLKSLEIEEK-----INKIRWLP-QQNAAHFLLSTNDKTIKLWK
   WD 3  126-165    KRP---EGYNLKD--EEGR-----IKDISTVT-SLR--VPVLKPTDLMVEVRP
   WD 4  170-201    ----------ANG--HTYH-----VNSISVNS-DGE--TYLS-ADDLRINMWH
   WD 5  214-252    IKP-----ANMED--LTEV-----ITAAEFHPQHCH--LFVYSSSKGTLRLCD
   WD 6  268-309    EPEDPGNRSFFSE--IISS-----VSDVKFSH-SGR--YLLTRD-YLTVKVWD
   WD 7  323-367    HEY---LRSRLCS--LYENDCIFDKFECVWNS-TDS--VIMTGAYNSFFRMFD
   WD 8  370-408    -TG---RGVTLEA--WRES-----SKPRAVLR-TRR--VYTGGRRRRGDVGVD

   WD40 Template    TGE---CLRTLSG--HTSG-----VTSVSFSP-DGK--RLVSGSEDGTIKVWD