Input parameters:

  Query = ENSDARP00000027484 (Len=1164)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000027484, Len=1164):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIRHLENRLWQRDHRDFR 80  
WD40-rpts                                                                                      

Query       81 AVQPDAGCYNELVPPVGMISNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH 160 
WD40-rpts                                        (______________WD 1_____________)   (_________

Query      161 DSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL 240 
WD40-rpts      ________WD 2________________)(__________________WD 3_________________)(_________

Query      241 RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNGNWLLTASRDHLCKLFDIRNL 320 
WD40-rpts      __________WD 4___________________)   (_________________WD 5________________)    

Query      321 KEELQVFRGHKKEATAVAWHPVHEGMFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400 
WD40-rpts      (_________________WD 6_________________)(___________________WD 7________________

Query      401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDMDTNSIAAIPGMGIPEQLKAAMEQEQSGKDMVAEPEMSIPGLDWGMEE 480 
WD40-rpts      __)(_________________WD 8_________________)                                     

Query      481 VMLRDQKKAPTKKVPYAKPIPAQFQQAWAENKVPVMPAGEVPKERKDEKKVDSKKKTQAEIEQEMAALQYTNPMLLEQLK 560 
WD40-rpts                                                                                      

Query      561 IERMAQLQEQGLPPPTGQQSGPVPSFPGQGGPMPPPAQGFPQSMPPQQTPHNMPPVGPGGMPGPFIPSGQMGPPGPPMHQ 640 
WD40-rpts                                                                                      

Query      641 GPPPQGMMGPPDMHGPPRHPGPHRNIGPQGPPGMPPGPRGMQGPPPGGMHPGSGGPPGSIMGPPPRGQGPPQGNMMHQDM 720 
WD40-rpts                                                                                      

Query      721 RGPVPHGNMMGPQGPMQGGMMGPPLRTHGMGNMHGMGPPPGGMHGPPNNMQGPPGNIQGPQSSMQGPPPYMQGKPPHMGD 800 
WD40-rpts                                                                                      

Query      801 GNRGQFSQVFQGQNQPIMHGIGQQGPNGKGNALNNGSRGPPNHHMAHPPERQGPGGPSQSSDGGQYWGEDGGYQEGWRRG 880 
WD40-rpts                                                                                      

Query      881 PGGPAQEYSGGHRGNSGGQWEGQERFSTRDEEFMGVQGFRAFHLNRFRCSANSRHLYRRGGPNVRGGMGGYQDEYGGDEN 960 
WD40-rpts                                                                                      

Query      961 FDSQEEMGQGWGGRGRPRGGPTRGGGVGRKGLLPTPDDYPSHYEGGRNEEGWEGGQDSGRSHEGYRDGQRPDHNMHDSPS 1040
WD40-rpts                                                                                      

Query     1041 PASRERSSSLQGMDMASLPPRKRPWHDGPGTGDMDSPGSGPDERGAEGRLKPRVPSADKFLTADGDLGRPTPRDEGGYGP 1120
WD40-rpts                                                                                      

Query     1121 PQRGGGRGGWGRGGLPNPGGPGSNMGPNLRRGAPRGAMRGGRGR 1164
WD40-rpts                                                  

8 WD40-repeats found in QUERY=ENSDARP00000027484 (Len=1164):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   115-147      6.48  382.34  0.00044       27.5%     43.84
  WD 2:  Seg  6   151-189      7.75  434.62  8.6e-05       20.0%     56.20
  WD 3:  Seg 10   190-230      9.14  492.16  1.4e-05       27.5%     51.78
  WD 4:  Seg 14   231-274      7.96  443.33  6.6e-05       42.5%     51.30
  WD 5:  Seg 18   278-316      8.73  475.32  2.4e-05       32.5%     52.01
  WD 6:  Seg 22   321-360      7.12  408.87  0.00019       30.0%     47.89
  WD 7:  Seg 25   361-403      7.91  441.46  7.0e-05       35.0%     49.49
  WD 8:  Seg 29   404-443      6.35  377.05  0.00052        7.5%     22.44

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  115-147    T------------NKVKCPVFVVRWTP-EGRRLVTGASSG--EFTLWN
   WD 2  151-189    -F---NF--ETILQAHDSPVRAMTWSH-NDMWMLTADHGG--YVKYWQ
   WD 3  190-230    SN--MNN--VKMFQAHKEAIREASFSP-TDNKFATCSDDG--TVRIWD
   WD 4  231-274    FL---RCHEERILRGHGADVKCVDWHP-TKGLVVSGSKDSQQPIKFWD
   WD 5  278-316    -G---QS--LATLHAHKNTVMEVKWNL-NGNWLLTASRDH--LCKLFD
   WD 6  321-360    -K---EE--LQVFRGHKKEATAVAWHPVHEGMFASGGSDG--SLLFWH
   WD 7  361-403    VGVEKEV--GGMEMAHEGMIWSLAWHP-LGHILCSGSNDH--TSKFWT
   WD 8  404-443    RN---RP--GDKMRDRYNLNLLPGMSE-DGVEYDDMDTNS--IAAIPG

   WD40 Template    TG---EC--LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDG--TIKVWD