Input parameters:

  Query = ENSDARP00000028733 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000028733, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQDYERRLLRQINHQNVPEGHPTKQSNYAACSPVSVKSGDRFIPTRAGSNWSINFHYANENCWSPNQNQRAKDASTDTG 80  
WD40-rpts                                                                                      

Query       81 KDAVAYAALLRNELLGAGIETVPDPHTDDRRHTILTQDTHSLFRYTIHTKRVPFDNEISPYSLSPLSNKSHKLLRSPRKP 160 
WD40-rpts                                                    (_________________WD 1____________

Query      161 ARKISKIPFKVLDAPELQDDFYLNLVDWSAGNLLSVGLGACVYLWSACTSQVTRLCDLSVDGDSVTSVCWNERGSLVAVG 240 
WD40-rpts      _____)                                        (___________________WD 2__________

Query      241 THKGFVQIWDAAGGRKLTSLEGHSARVGALAWNGEQLSSGSRDRVILQRDVRTPPPVERRLQGHRQEVCGLKWSPDHQHL 320 
WD40-rpts      _________)   (________________WD 3_______________)(___________________WD 4______

Query      321 ASGGNDNKLLVWNSSSLLPVQQYSDHLAAVKAIAWSPHQHGLLASGGGTADRCLRFWNTLTGQALQSTDTGSQVCNLAWS 400 
WD40-rpts      ____________)   (__________________WD 5__________________)   (_________________W

Query      401 KHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAVSPDGEAIVTGAGDETLRFWNVFSKTRCTKESKSVLNL 480 
WD40-rpts      D 6_________________)   (_________________WD 7________________)                 

Query      481 FTRIR 485 
WD40-rpts           

7 WD40-repeats found in QUERY=ENSDARP00000028733 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   127-166      4.28  291.32  0.00736       10.0%      8.23
  WD 2:  Seg 10   207-250      7.80  436.84  8.1e-05       30.0%     54.15
  WD 3:  Seg 14   254-290      7.01  404.34  0.00022       35.0%     52.97
  WD 4:  Seg 18   291-333      9.11  490.83  1.5e-05       35.0%     46.76
  WD 5:  Seg 21   337-378      6.90  399.76  0.00025       22.5%     41.69
  WD 6:  Seg 25   382-421      5.27  332.56  0.00205       30.0%     48.03
  WD 7:  Seg 29   425-463      9.28  498.16  1.2e-05       32.5%     54.97

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-166    IH---TK----RVPFDNEISPYSLSPLSNKSHKLLR---SPRKPARKISK
   WD 2  207-250    AC---TSQVTRLCDLSVDGDSVTSVCWNERGSLVAV---GTHKGFVQIWD
   WD 3  254-290    -G---RK----LTSLEGHSARVGALAW--NGEQLSS---GSRDRVILQRD
   WD 4  291-333    VRTPPPV----ERRLQGHRQEVCGLKWSPDHQHLAS---GGNDNKLLVWN
   WD 5  337-378    -L---LP----VQQYSDHLAAVKAIAWSPHQHGLLASGGGTADRCLRFWN
   WD 6  382-421    -G---QA----LQSTDTG-SQVCNLAWSKHANELVS-THGYSQNQILVWK
   WD 7  425-463    -L---TQ----VAKLTGHSYRVLYLAVSPDGEAIVT---GAGDETLRFWN

   WD40 Template    TG---EC----LRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD