Input parameters:

  Query = ENSDARP00000029666 (Len=1364)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000029666, Len=1364):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKLSPFSNLAKFISKSPDNGPVGGEQLCMKDCKPLCHCDPELCVCSLPQNSKDGPTEYKENGSQQEGWIPTKHAFDNFG 80  
WD40-rpts                                                                                      

Query       81 YEPDGLKHNLVHQLPSEEGMVKIQVEGMTCQSCVRSIEEQIGRLEGVIGVQVSLSDKEAILRFNPAKVTPEDMRKRIEDM 160 
WD40-rpts                                                                                      

Query      161 GFDALILALQGQIQPLSTDWSEVTLGVEGMHCGSCVKNITETLSGMLGVNSVFVSLEKGSVDLRFDPSLLTLETVKGFLE 240 
WD40-rpts                                                                                      

Query      241 EIPPGNFRVSIPGWSSRLNSASTPTQSVTIGIEGMTCNSCVQAIEGMMSQRAGVCSIKVYLQEKKGIVTFDSTVTCPEEL 320 
WD40-rpts                                                                                      

Query      321 RAEIEDMGFEAWLNQDSEICEVSSVSQMPSGLKHLPSQRHPSKPSPSPITKENADGTGERELRKCFVHVTGMTCASCVSN 400 
WD40-rpts                                                                                      

Query      401 IERNLVKHEGIKSVLVALMAGKAEVKYDPGLLDPAQIVQLISHLGFGASVMEEHSVQDGVLDLSVTGMTCASCVHNIESK 480 
WD40-rpts                                                                                      

Query      481 LLRTKGIQEASVALATNKAHVKFDSDLVGSRDIVRIIEGLGFGVSLIKNEGLNNTLDHQEEIRQWKHSFLFSLVFGIPVM 560 
WD40-rpts                                                                                      

Query      561 GLMIYMMVMDSQHKEHGGSMPADQNILPGLSIINLAFFLLCTPVQFLGGRYFYIQAYRSLRHGVANMDVLIVLATTIAYV 640 
WD40-rpts                                                                                      

Query      641 YSFTVLIVAMIEGAKQSPLTFFDTPPMLFVFIALGRWLEHVAKSKTSEALAKLMSLQATDATIVSLGPDNTIIREEQVSV 720 
WD40-rpts                                                                                      

Query      721 DLVQRGDVVKVAPGGKFPVDGKVIEGTSMADESLITGEPMPVIKKAGSCVIAGSINAHGALLVEATHVGSETTLSQIVKL 800 
WD40-rpts                                                                                      

Query      801 VEEAQTSKAPIQQLADKLSGYFVPFIVVISILTVTAWLIIGFLDFDVVSKNFPGYNQNISRTEVIVRFAFQASITVLSIA 880 
WD40-rpts                                                                                      

Query      881 CPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVGAVMFDKTGTITNGVPQVTRVLVLWDRARLPLRTVLAVVGT 960 
WD40-rpts                                                                                      

Query      961 AEASSEHPLGMAVAKHCKEELGAETLGFCHDFQAVPGCGISCKVSSVEDLLQNSPKTQETKASAVKQTPLLVTLQGVTTD 1040
WD40-rpts                                                                                      

Query     1041 ESSLVADTDSGSDSPSYSVLIGNRQWMLRNGLEVTADVDNAMSSHETKGQTAILVAIDGVLCAMIAVADTVKAESALAVH 1120
WD40-rpts                                                                                      

Query     1121 TLSSMGIEVYMITGDNRRTARAIATQVGIRKVFAEVLPSHKVAKVQELQERGLKVAMVGDGVNDSPALAHADLGIAIGTG 1200
WD40-rpts          (___________________________________________WD 1____________________________

Query     1201 TDVAIEAADIVLIRNDLLDVVASIELSKKTVQRIRINFVFALIYNLLGIPFAAGVFMPLGLVLQPWMGSAAMAASSVSVV 1280
WD40-rpts      _______________)                                                                

Query     1281 LSSLLLRLFKKTSVEEYESRAQSHKLSLSPSQVSTHVGLESRRCSPLSDRKRRSRSASGSSSFISGSFHPSTTQPYNTSG 1360
WD40-rpts                                                                                      

Query     1361 RSIV 1364
WD40-rpts          

1 WD40-repeats found in QUERY=ENSDARP00000029666 (Len=1364):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 34  1125-1216     2.98  237.78  0.03821       17.5%      9.57

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1125-1216   MGIEVYMITGDNRRTARAIATQVGIRKVFAEVLPSHKVAKVQELQERGLKVAMVGDGVNDSPALAHADLGIAIGTGTDVAIEAADIVLIRND

   WD40 Template    TGECLRTLSGHT-------------SGVTSVSFS--------------PDGKRLVSGSED-------------G------------TIKVWD