Input parameters:
Query = ENSDARP00000030778 (Len=497)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000030778, Len=497):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSVFSQLIGQWLDVQGFLIFLCVLLLVKHFRDVYSKNMPPGPFPLPFVGNLTNIGFSDPLGSFQRIAEKYGDVCTLYLG 80
WD40-rpts (
Query 81 TKPCILMTGYDTLKEAFVEQADIFTDRPYFPIVDKLGNGKGLIMSSGHMWRQQRRFALATLKYFGVGKKTLENAILQECR 160
WD40-rpts _____________________________________________WD 1_______________________________
Query 161 FLCDSLQAERGLPFDPQHLVTNAVSNIICGLVFGHRFEYDDHQFHLMQTYINNILQLPISNWGRLYNEFPTLMSLLPGKH 240
WD40-rpts ______________)
Query 241 QTAFASMSKLQPFLKEEITKHQQDREPSSPRDYIDCYLEEIEKCKDSDAEFTEENLMFCVVDLFGAGTETTSNTLRWALA 320
WD40-rpts
Query 321 FMVKYPDVQEKVQSEIDQVIGQTRQPLMDDRTNLPYTYAVIHEIQRFANIVTFTPPRVANKDTTVGGQLIPKGVIVLPML 400
WD40-rpts
Query 401 KPILLDKKEYSTPYDFNPDHFLDQNGKFLKKENFIPFSIGKRMCPGEQLARMELFLFFISLMQHFTFLPVEGQKLSLKGT 480
WD40-rpts
Query 481 TSVSSAPQPFQIRAVPR 497
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000030778 (Len=497):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 80-175 2.79 229.88 0.04856 25.0% 4.62
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 80-175 GTKPCILMTGYDTLKEAFVEQADIFTDRPYFPIVDKLGNGKGLIMSSGHMWRQQRRFALATLKYFGVGKKTLENAILQECRFLCDSLQAERGLPFD
WD40 Template TGECLRTLSG----------HTSGVTSVSFSP------DGKRLVSGSE----------------DGTIK------------------------VWD