Input parameters:

  Query = ENSDARP00000031340 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000031340, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKCGFEPGLRRQYLRLRSQLLALRYGPLSEQSSFRASSV 80  
WD40-rpts                                 (______________________________WD 1__________________

Query       81 RSSRTTLDRMEDFEEDPRAQGARGHRRSVSRGSYQLQAQMNRAVYDERPPGSLVPTSVAEASRAMAGDTTLSENYAFAGM 160 
WD40-rpts      ___________)      (______________________WD 2_____________________)           (_

Query      161 HHIFDQHVDSAVPRLQFANDDKHLLACCSLDGTLSIMTLSPPPPTVKVTLKGHAGPVTDFAWSLSNDIIVSTSKDGTLRI 240 
WD40-rpts      ________________WD 3_________________)     (_________________WD 4_______________

Query      241 WNTEDGRCIREVVDPEGSELLCCTFQPMNNNLTVVGNSKQHLQVVNISTGKKVKGGSSKLTGRVLSLSFDAPGRILWAGD 320 
WD40-rpts      _)   (__________________WD 5_________________)   (__________________WD 6________

Query      321 DRGSIFSFLFDMATGKLTKAKRLVVNEGSSISSISARSWISREARDPSLLVNACVNKLLLYRVVDNEGTLQLKRSFPIQH 400 
WD40-rpts      __________)             (________________WD 7________________)  (_______________

Query      401 GSQPLHSIFCPLMSFRQGACVVTGSEDACVYFFDVERNTKAIVNKLQGHSGPVLDVSFNCDESLLASSDASGMVIIWRRE 480 
WD40-rpts      _______WD 8______________________)     (_________________WD 9________________)  

Query      481 QK 482 
WD40-rpts        

9 WD40-repeats found in QUERY=ENSDARP00000031340 (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    28-92       3.85  273.87  0.01262       15.0%     37.02
  WD 2:  Seg  5    99-147      5.44  339.29  0.00166       15.0%     43.03
  WD 3:  Seg  8   159-198      5.85  356.35  0.00098       27.5%     50.94
  WD 4:  Seg 12   204-242      9.49  506.80  9.2e-06       35.0%     53.55
  WD 5:  Seg 16   246-286      6.40  378.88  0.00049       25.0%     55.67
  WD 6:  Seg 20   290-331      6.44  380.80  0.00046       32.5%     52.91
  WD 7:  Seg 25   345-382      3.94  277.25  0.01137       10.0%     37.60
  WD 8:  Seg 29   385-434      7.73  434.11  8.8e-05       32.5%     53.27
  WD 9:  Seg 33   440-478      9.23  496.10  1.3e-05       30.0%     50.62

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-92     -TQYIRRRSQLLRENAKCGF-----EPGLRRQYLRL-RSQLLALRYG-------------P-----LSEQSSFRASS-VRSSRTTLD--RMED
   WD 2   99-147    ----AQG-----------AR-----G---------H-RRSVSRGSYQLQAQMNRAVYDERP-----PGSL------V-PTSVAEASR--AMAG
   WD 3  159-198    -GMHHIF-----------DQ-----H---------V-DSAVPRLQFA-------------N-----DDKH------LLACCSLDGTL--SIMT
   WD 4  204-242    -PTVKVT-----------LK-----G---------H-AGPVTDFAWS-------------L-----SNDI------I-VSTSKDGTL--RIWN
   WD 5  246-286    -GRCIRE----------VVD-----P---------E-GSELLCCTFQ-------------P-----MNNN------LTVVGNSKQHL--QVVN
   WD 6  290-331    -GKKVKG-----------GS-----S---------KLTGRVLSLSFD-------------A-----PGRI------L-WAGDDRGSIFSFLFD
   WD 7  345-382    -VNEGSS-----------IS-----S---------I-SARSWISREA-------------R-----DPSL------L-VNACVN-KL--LLYR
   WD 8  385-434    DNEGTLQ-----------LKRSFPIQ---------H-GSQPLHSIFC-------------PLMSFRQGAC------V-VTGSEDACV--YFFD
   WD 9  440-478    -KAIVNK-----------LQ-----G---------H-SGPVLDVSFN-------------C-----DESL------L-ASSDASGMV--IIWR

   WD40 Template    TGECLRT-----------LS-----G---------H-TSGVTSVSFS-------------P-----DGKR------L-VSGSEDGTI--KVWD