Input parameters:
Query = ENSDARP00000031510 (Len=215)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000031510, Len=215):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGAVVGTLTMQTRQRQPSRDKVDDELEMTMVCHRPEGLEQLEAQTNFSKQELQVLYRGFKNECPSGVVNEDTFKHIYAQF 80
WD40-rpts (________________________________________________________________WD 1___________
Query 81 FPHGDASTYAHYLFHAFDTRNNGSIKFEDFVMGLSTLLRGTVRDKLEWTFHLYDINKDGFINKEEMTEIVRAIYDMMGKY 160
WD40-rpts _____________________________________________________)
Query 161 TYPALKGDVPKAHVDAFFEKMDKNKDGVVTLEEFVLACQEDENMMRSMQLFENVM 215
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000031510 (Len=215):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-134 3.10 242.63 0.03295 27.5% -16.18
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-134 MGAVVGTLTMQTRQRQPSRDKVDDELEMTMVCHRPEGLEQLEAQTNFSKQELQVLYRGFKNECPSGVVNEDTFKHIYAQFFPHGDASTYAHYLFHAFDTRNNGSIKFEDFVMGLSTLLRGTVRDKLEWTFHLYD
WD40 Template TGE----------CLRTLS-------GHTSGVTSV----------SFS---------------PDGKRL----------------VS-----------GSEDGTIK-------------VW------------D