Accession: ENSDARP00000033554 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000033554 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000033554, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 APTADIISTVEFNPTGELLATGDKGGRVVVFQREQESKNQPHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 80  
WD40-rpts      (_____________WD 1_____________)                      (____________________WD 2_

Query       81 QNAAYFLLSTNDKTVKLWKISERDKRPEGYNLKDEDGRIRDPSTITALRVPVLRPMDLMVEATPRRIFANAHTYHINSIS 160 
WD40-rpts      __________________)(____________________WD 3___________________)(_______________

Query      161 VNSDYETYMSTDDLRINLWNLEITNRSFNIVDIKPANMEELTEVITAAEFHPNQCNTFVYSSSKGSIRLCDMRTSALCDN 240 
WD40-rpts      WD 4_______________)            (_________________WD 5________________)         

Query      241 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYLMTRDYLTVKVWDINMESKPLETYQVHDYLRSKLCSLYENDCIFD 320 
WD40-rpts                (________________WD 6________________)            (___________________

Query      321 KFECVWNGTDSVLMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAW 400 
WD40-rpts      _WD 7____________________)   (_________________WD 8________________)            

Query      401 HPNENIIAVAATNNLYIFQDKVN 423 
WD40-rpts

8 WD40-repeats found in QUERY=ENSDARP00000033554 (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       6.40  378.89  0.00049       20.0%     46.79
  WD 2:  Seg  5    55-99       4.36  294.66  0.00664       15.0%     40.07
  WD 3:  Seg  9   100-144      5.58  344.98  0.00140       12.5%      7.73
  WD 4:  Seg 11   145-180      6.07  365.58  0.00074       22.5%     47.50
  WD 5:  Seg 16   193-231      6.54  384.62  0.00041       22.5%     40.82
  WD 6:  Seg 19   251-288      5.61  346.28  0.00134       30.0%     42.25
  WD 7:  Seg 23   301-346      5.48  340.86  0.00159       15.0%     40.97
  WD 8:  Seg 26   350-388      4.47  299.19  0.00577        7.5%     25.60

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     -------------------APTADIISTVEFNP--T-GELLATGDKGGRVVVFQ
   WD 2   55-99     SHEPEF-----DY---LKSLEIEEKINKIRWLPQQN-AAYFLLSTNDKTVKLWK
   WD 3  100-144    ISERDKRPEGYNL------KDEDGRIRDPSTIT--A-LRVPVLRPMDLMVEATP
   WD 4  145-180    ---RRI-----FA------NAHTYHINSISVNS--D-YETYMS-TDDLRINLWN
   WD 5  193-231    --IKPA-----NM------EELTEVITAAEFHP--NQCNTFVYSSSKGSIRLCD
   WD 6  251-288    -PSNRS-----FF------SEIISSISDVKFSH--S-GRYLMT-RDYLTVKVWD
   WD 7  301-346    VHDYLR-----SKLCSLYENDCIFDKFECVWNG--T-DSVLMTGSYNNFFRMFD
   WD 8  350-388    -KRDVT-----LE------ASRENSKPRAILKP--R-KVCVGGKRRKDEISVDS

   WD40 Template    TGECLR-----TL------SGHTSGVTSVSFSP--D-GKRLVSGSEDGTIKVWD