Input parameters:

  Query = ENSDARP00000034617 (Len=1262)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000034617, Len=1262):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADGLPSGLLEACIVIGASSDKLNKLSQSLSQLNGSPLPLLDPEVLQVHRPLFCLKQNVTEPAVETLSPTQQWCSPIQKN 80  
WD40-rpts                                                                                      

Query       81 NDKPTFNTVNPKEEATENASTLKELDLAALPQLCFPGGLQVTKKQKDEQFHYLVFTDVLGNQSHGVVLQFYRATQEGKQH 160 
WD40-rpts                                                                                      

Query      161 QNGHQTSYKPPQLYTPYAVCVISKHPYYSALKDCLSSLLRELKICQMTEMEERAKEFSAKLSVVPVPPPGQLHVMFIMQP 240 
WD40-rpts                                                                                      

Query      241 LMIVLPSREDQHHPVVDLDLHLPFLCFKSKEVLQIIACILTEQRMVFFSSDWAKLTLIAECFMLYIWPLRWQHPLVPILS 320 
WD40-rpts                                                                                      

Query      321 QHMLDFVMAPTAFIMGCHISHYEEVAEENDDLILINIDEGTVSCSSILDFDIPDVPYAAAQCFKSRRKGLRLHYDLNLLN 400 
WD40-rpts                                                                                      

Query      401 QSICGDLNELRNQRRCWQQRLNKEIQNISLELLFNMFRRDVSDYLNYEHRVFNTDEFLKTRDPEDQSFYKKVLETPIFHS 480 
WD40-rpts                                                                                      

Query      481 FLKERLNRKMDMFAQLELSNLTEEQNRYRNAVDSSRRPTIQEMRRSSSKNGHRSSLFNQDDKQVSPTSTPERQSSVSKCR 560 
WD40-rpts                                                                                      

Query      561 LSIHALNTTAWPVKIFQLPFFPRPLNHLNILHYIEDLILKLNKAISAVSPDDSSLLARYFYLRGLINMQNSKRLDALSDF 640 
WD40-rpts                                                                                      

Query      641 QNLYKTDIGVFPRELVKTLVHSLQKEERVQVEERCELRRLICQVKSKEKREQMECDNHVKKFQLPKAPMQLEEFVKCIQE 720 
WD40-rpts                                                                                      

Query      721 SGIVRDVATIQRLFEALNAGGQKQIVPELFRMFYKFWKETEAEAQDVLLPAEVLERLDSNECVYKLSRSVKTSYGVGKIA 800 
WD40-rpts                                                                                      

Query      801 MTQKRIFLLTTGSPGYVDITKFRDIEEVKISAPVRILRNSSLKIKNSLRDEIFEANLKSECELWNLMVKEMWAGRMMADN 880 
WD40-rpts                           (_________________________________________WD 1_____________

Query      881 NKDPQYVQQALTNVLLMDAVVGCLQTQKSVCAASKLAYHEKLRQEVPVIIPRDTAWTLKHKINPSQNMMNPQSVDVLFYS 960 
WD40-rpts      ___________________________)                               (_________________WD 

Query      961 PGQLTFPDSDVDVNPKLWCGLGCGKVVVFDAASWSLKQNCIHLGDSRLNCMMGLDQDQVWIGSEDSVIYIINTRSMLCHK 1040
WD40-rpts      2_________________)                                           (_________________

Query     1041 QLTEHRGELTDFTLHNNTKRRAQVYSCSADGTVIVWDVPSLKVKRQFHLSCDRLQSIQIHNGALWCVCEGARDCIMMLKP 1120
WD40-rpts      ________WD 3________________________)   (_________________WD 4________________) 

Query     1121 NGDQLWKIHLPDKMKATANFFNRVTLFPERQQIWTSFTDFAELCIWDFNDPVKPPKRLKLPNCKGVTCMIKVKKQVWIGC 1200
WD40-rpts               (________________WD 5________________)                                (

Query     1201 GGGSGLSKVVGKILVLDSESLEVEKELEAHEDSVQVLFSVEDRYVLSGSAKLEGRIAIWRVD 1262
WD40-rpts      ____________________________WD 6___________________________)  

6 WD40-repeats found in QUERY=ENSDARP00000034617 (Len=1262):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   822-908      3.12  243.44  0.03215       15.0%     13.95
  WD 2:  Seg 19   940-979      5.35  335.72  0.00186       15.0%     13.52
  WD 3:  Seg 24  1023-1077     5.85  356.52  0.00098       27.5%     33.62
  WD 4:  Seg 28  1081-1119     4.10  283.99  0.00924       10.0%     42.87
  WD 5:  Seg 33  1130-1167     3.37  254.07  0.02322       12.5%     34.25
  WD 6:  Seg 37  1200-1260     3.79  271.32  0.01366       32.5%     36.29

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  822-908    FRD------------IEEVKISAPV------RILR--------NSSLKIKNSLRDEIFEANLK---SECELWNLMVKEMWAGRMM-ADNNK--DPQYVQQALTNVLLMDAVVGCLQTQK
   WD 2  940-979    HKI------------N--------P------SQNM--------MNPQSVDVL---------FY---SPG------------QLTF-PDSDV--D------------------VNPKLWC
   WD 3 1023-1077   SED------------S--------VIYIINTRSML--CHKQLTEHRGELTDF---------TLHNNTKR------------RAQV-YSCSA--D------------------GTVIVWD
   WD 4 1081-1119   -LK------------V--------K------RQFH--------LSCDRLQSI---------QI---HNG------------ALWC-VCEGA--R------------------DCIMMLK
   WD 5 1130-1167   LPD-----------------------------KMK--------ATANFFNRV---------TL---FPE------------RQQIWTSFTD--F------------------AELCIWD
   WD 6 1200-1260   CGGGSGLSKVVGKILV--------L------DSESLEVEKELEAHEDSVQVL----------F---SVE------------DRYV-LSGSAKLE------------------GRIAIWR

   WD40 Template    TGE------------C--------L------RTLS--------GHTSGVTSV---------SF---SPD------------GKRL-VSGSE--D------------------GTIKVWD