Input parameters:
Query = ENSDARP00000035846 (Len=557)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000035846, Len=557):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLTSKQTVREQAV 80
WD40-rpts (______________________________________
Query 81 RAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQNLQLHSSLEML 160
WD40-rpts ________WD 1_____________________________________________)
Query 161 VIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDK 240
WD40-rpts
Query 241 FLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLESPA 320
WD40-rpts
Query 321 GSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLS 400
WD40-rpts
Query 401 EVENALTGDSNNCVLKPYEFRMEEIEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDK 480
WD40-rpts
Query 481 DLHPAIIKPHMKNVPEYLIPTALKSLVNPLNQRRKRKKVKSSGVMLSSFKKNYRGRNPLKSFRYAKKRRGEKKAGKP 557
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000035846 (Len=557):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 42-138 2.81 230.83 0.04718 27.5% 39.44
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 42-138 EGKDLLARARTGSGKTAAYAVPLIQRVLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPILMEKPDIVVST
WD40 Template TGECLRTLSGHTS------------------------GVTSVSFSPD----------------------GKRLVSGSED-----------GTIKVWD