Input parameters:

  Query = ENSDARP00000036145 (Len=576)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000036145, Len=576):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQSNGTGQEQNHPANTQNGDANGLQSNAGSASGASGTGSGSLKKKKRLSQAEEDVIRLIGQHLHGLGLNQTVDLLMQESG 80  
WD40-rpts                                                                                      

Query       81 CRLEHSSATKFRNHVMEGEWDKAENDLNELKALMHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTD 160 
WD40-rpts                                                   (___________________________WD 1___

Query      161 RIHVLSGYLMCSHAEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDSSLD 240 
WD40-rpts      _______________________)                                                        

Query      241 SVSLLLDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVEPDTHQLKLLRTLEGHAYGVSYLA 320 
WD40-rpts                      (_________________WD 2________________)       (_________________

Query      321 WSPDDVYLIACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLESWEGVRV 400 
WD40-rpts      _WD 3_________________)(___________________WD 4__________________)  (___________

Query      401 QCLWCMGDGRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVT 480 
WD40-rpts      _____WD 5_______________)(__________________WD 6_________________)   (__________

Query      481 QGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTRTVNCVSWNPCIPSLMASASDDGTVRIWGPAPFLD 560 
WD40-rpts      ________WD 7__________________)   (_________________WD 8_________________)      

Query      561 AQELDGLTESCSSMDS 576 
WD40-rpts                      

8 WD40-repeats found in QUERY=ENSDARP00000036145 (Len=576):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   126-184      3.89  275.55  0.01198       12.5%     21.36
  WD 2:  Seg  6   257-295      8.89  481.70  2.0e-05       32.5%     49.78
  WD 3:  Seg 10   303-343      8.03  446.19  6.0e-05       35.0%     53.39
  WD 4:  Seg 14   344-386      8.48  465.00  3.4e-05       32.5%     55.54
  WD 5:  Seg 18   389-425      6.54  384.98  0.00040       17.5%     53.36
  WD 6:  Seg 22   426-466      7.46  422.99  0.00012       15.0%     55.93
  WD 7:  Seg 26   470-511      7.25  414.22  0.00016       27.5%     52.02
  WD 8:  Seg 30   515-554      8.40  461.59  3.7e-05       35.0%     53.36

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-184    LLL---QQKYLEYLEDG---KVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSHAEDLKA--KAEWE
   WD 2  257-295    -CY---TQQILTEHCNE---V------------WFCKFSND-------GTKLATGSKDTT--VIIWQ
   WD 3  303-343    -LK---LLRTLEGHAYG---V------------SYLAWSPD-------DVYLIACGPDDCSELWLWN
   WD 4  344-386    VQTGELRTKMSQSHEDS---L------------TSVAWNPD-------GKRFVTGGQRGQ--FYQCD
   WD 5  389-425    -GN---LLESWEGVR-----V------------QCLWCMGD-------GRTVLASDTHQR--IRGYS
   WD 6  426-466    FED--LTDRNIVQEDHP---I------------MSFTVSKN-------GRLALLNVATQG--VHLWD
   WD 7  470-511    -RV---LVRKYQGVTQGFYTI------------HSCFGGHN-------EDFIASGSEDHK--VYIWH
   WD 8  515-554    -EL---PIVELTGHTRT---V------------NCVSWNPC------IPSLMASASDDGT--VRIWG

   WD40 Template    TGE---CLRTLSGHTSG---V------------TSVSFSPD-------GKRLVSGSEDGT--IKVWD