Input parameters:

  Query = ENSDARP00000037790 (Len=344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000037790, Len=344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPN 80  
WD40-rpts      (________________WD 1_______________)   (____________________WD 2_______________

Query       81 KVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPA 160 
WD40-rpts      _____)(________________WD 3________________)    (__________________WD 4_________

Query      161 THSGHVQIVDLANTEKPPVDIPAHEGVLCCITLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQ 240 
WD40-rpts      _________)    (_________________WD 5_________________)   (__________________WD 6

Query      241 DASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCVCAFGTEPNAVIAICADGSYYKF 320 
WD40-rpts      _________________)                                                              

Query      321 LFNPKGECSRDVYAQFLEMTDEKI 344 
WD40-rpts                              

6 WD40-repeats found in QUERY=ENSDARP00000037790 (Len=344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.36  336.12  0.00184       22.5%     41.94
  WD 2:  Seg  4    41-86       4.66  306.96  0.00454       15.0%     37.87
  WD 3:  Seg  8    87-124      3.52  260.08  0.01930       20.0%     40.39
  WD 4:  Seg 12   129-170      3.36  253.35  0.02373       12.5%     47.74
  WD 5:  Seg 16   175-214      7.26  414.35  0.00016       22.5%     51.37
  WD 6:  Seg 20   218-258      7.03  405.17  0.00022       20.0%     54.96

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     MN--LLPSN-PH--GN--GLLYAGFNQDHGCFA-------CGMENG--FRVYN
   WD 2   41-86     -LKEKEKQE-FL--EG--GVGHVEMLFRCNYLALVGGGKKPKYPPNK-VMIWD
   WD 3   87-124    DLKKKTVIEIEF--ST--EVKAVKLRRDRIVVV-------L---DSM-IKVFT
   WD 4  129-170    -PHQLHVFE-TC--YNPKGLCVLCPNSNNSLLA------FPATHSGH-VQIVD
   WD 5  175-214    -EKPPVDIP-AH--EG--VLCCITLNLQGTRIA-------TASEKGTLIRIFD
   WD 6  218-258    -GQLIQELR-RGSQTA--NIYCINFNQDASLIC-------VSSDHGT-VHIFA

   WD40 Template    TGECLRTLS-GH--TS--GVTSVSFSPDGKRLV-------SGSEDGT-IKVWD