WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000038543 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000038543 (Len=2801) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000038543, Len=2801): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASKERLYELWMLYYTKKDVVYLQQWLEAFVASFEKVIDVHSIEPRRLEEWSADVPLLPKEVLVFLSTQLWHSALHMSGQ 80
WD40-rpts
Query 81 DQSITAPHPLLLIKFFIIICRNMENIDSEKTPGFVFETIKLLNFCLAQLKKQPDDQSTLQAVVQHGLLLCENLFDPYQTW 160
WD40-rpts
Query 161 RRRQAGEEVSMLERSKYKFSPLVLPEELPMLFHEYLQDSELIPEPLVVRLVHLQGAVISGCKRNGLLSITPQAVKDLMSV 240
WD40-rpts
Query 241 LRSWCLCPASSPQQPRDPQLLRMALRCLTVMIHLLHSSSVNERQVEIRSALDDYFQLLNWNRPPDSQQGDMHAWEDNLIT 320
WD40-rpts
Query 321 LLEHMLNAIPEILQCSDRPVLQAIFLNNNCFEHILRLIQNSKLYQSNRFKLECEGQCDLTTRLLTESEVEQVWEKGSDCI 400
WD40-rpts
Query 401 TVHAIRVLTAIMSNSPSAKEVFKERIGYSQLFDVLKSQGQPTKRLLQELMNMAVEGEHSQAMQLGISNEQPLLLLLQWLP 480
WD40-rpts
Query 481 DLGSRSLQLLVSQWLAAVCRGTLSCRTVSVEAGLVGSLLEVLSEPPERLDRQCADSLLGLLQDLGSLSLRPCELKSLLKL 560
WD40-rpts
Query 561 LRTEPGAPPHPYCGRVVRVLSAMAARGEGGCSALQYFDLTPPMAGIMVPAIQRWPGSAFAFHAWLCLNTDFPPPQHHYSE 640
WD40-rpts
Query 641 SHLTNMDNTVRMAKGPRRKQLYSFFTASGTGFEAFFTTEEVLVVAVCTKKEYMAVSLPEHPFNDCAWHSVAIVHVPGRRP 720
WD40-rpts
Query 721 FGQNVVTVYVDGVQCKTAPLRFPSLNEPFTSCCIGSAGHRTTTTTMTTSPTLPNPPHSPSEMAFAAHTGPPTLLRSQSFP 800
WD40-rpts
Query 801 ASFAAAAGGRPGGNRESPVHTIQAGLQDTAWGSPSSLGGLLATAFICHEALQPAQARALFTAGPNNVSLFKADGEPSEVN 880
WD40-rpts
Query 881 SKLVLYYTPKAFKSQICLDLSPNHLYDGRLTGHRVVNWDVKDVLSSVGGMGALLPLLEQVCLLDQRETVGQETSDLLGPE 960
WD40-rpts
Query 961 LTSSRGPAGMLLPLGKSSEGRLEKNSVAAFLLMIKNMLRNHPANQESLLQCHGPAIIGAMLGKVPSSMMDMSVLMACQFL 1040
WD40-rpts
Query 1041 LKQVSNEGNNALLSQLYQYLLFDFRIWSRSHFAVCLGHVQYLTTVINEGKLKTRRKYGVQYILDSIRTHYSVEKDGSPLS 1120
WD40-rpts
Query 1121 DERQTVQISLFSLLKDLLKSPTAEELHSVLAYAAIVQDEQQVISVLDVLHTVLKSSPPPREQVVTVLLDRRVEQLYYLLL 1200
WD40-rpts
Query 1201 KTNYGDEARERLFRVMYKVLKSERVHDRNKQLIKLKDSGYLGLVCSFGDVPITMTTVRCLYEQVLATDPTPSFKDLLAVV 1280
WD40-rpts
Query 1281 YLSHRADLSARLEIVRKLFCLIHSNEEYVKQLAHQSGWQDVLTKLYVKESYESRVRSQSNSLSSPTSSLDPVLSRPVFRR 1360
WD40-rpts
Query 1361 DDSVTEDVRQNVYITLAARHEEEYEEEEGETQDASEGFSDLSQSPPSTGQLKNDSLHFKPFDSGDQSSHSSTLSNTVDFP 1440
WD40-rpts
Query 1441 PSRLQEEDEAVYQPLSPFGSPFELELNHQKGPQTPVGSQPETPSPLEHNKTFLGMRPRKSSSLSNVLDDTSYSTEPPTDT 1520
WD40-rpts
Query 1521 ISNTSNPQAPEEELCNLLTNIVFSVLWIGTEGSEDVIWRERGQVFSVLTKLGSSCQLVRPPDDIKRSLLEMMLESSLSDL 1600
WD40-rpts
Query 1601 RDSQGVSLPHVPSLLRLLRLLQDFLFAEGTCNHTLWSEKIFEGVVNLLDRLKAWHTTPGSAGSAELKEMSLIGLRIITGY 1680
WD40-rpts
Query 1681 IQQQQNPQVCEMACLKLHSLLQTVLCLSWEEVCFLLGRLGAPLCPANSASDTSAEGLPSPLVPIVRALLDQHADHTTLQE 1760
WD40-rpts
Query 1761 KLPNLPATNGSPSFAQDLQIYCSTAEWQQFYQNHVEPTMQQYELDTFGKSHDLMSNFWNSCFDDLMSTGQRRDKERSDSK 1840
WD40-rpts
Query 1841 AKFQEVIVDPYLKRVRTENSRYHSVQKMINGQQTVVWRHWRSLRRLLSSDRGAWPLRVQPEVKWKLSSAETYSKMRLKLV 1920
WD40-rpts
Query 1921 PNYSFDSHSDASALRDNMGADSPRSSTEPLPLAVAREAKVSDMDDDKLEDEDIVFLEEAEEAEEESQKEKLVLSEDCELI 2000
WD40-rpts
Query 2001 TIVAVVPGRLEVTTHHLYFYDGSSEKEETEEGIGFDFKRPLSQLREVHLRRYNLRRSALELFFIDQSHYFINFRKGVRNK 2080
WD40-rpts
Query 2081 VYSRILGLRPPNLFYFGSRSPQELLKASNLTHRWVCREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLCDYTSAELDLD 2160
WD40-rpts
Query 2161 DPAVFRDLSKPIGVVNPRHAQNVREKYESFEDPTGTIDKFHYGTHYSNAAGVMHYMIRTEPFTSLHIQLQSGKFDCADRQ 2240
WD40-rpts
Query 2241 FHSIAAAWQARMESPADVKELIPEFFYFPEFLENMNGFDLGCLQISQEKVNNVLLPPWASSREDFIRKHRKALESEHVSA 2320
WD40-rpts
Query 2321 HLHEWIDLIFGYKQRGPEAVEALNVFYYCTYEGAVDLDAIANETERKALEGIISNFGQTPCQLLKEPHPPRMSAENAFRR 2400
WD40-rpts
Query 2401 AARLDILPPNLFDQLSKLRSFKEVVSDGLALVQAVVPRNQTRSFIIPGSDILVTVSANGMIGTHSWLPYDKNIANYFTFT 2480
WD40-rpts
Query 2481 RDPSVSNPKTQRFLSGPFSPGVEMGSQVLVVSSDGRLLFSGGHWDCSLRVTMLGKAKLVGRICRHIDVVTCLALDLCGIY 2560
WD40-rpts (_________________WD 1___
Query 2561 LISGSRDTTCMVWQVLQQGGFSSGLSPRPIQVLCGHDQEVTCVAISTELDMAISGSKDGTVIVHSVRRGQYLWTLRPPCE 2640
WD40-rpts _____________) (_________________WD 2________________)
Query 2641 NCVSAPVAQLEVGMEGHIVMQTVLEGRSAGKERYALHVYSVNGTLLASETLDEKISALYLVPDYLIVGTQQGNLHIRDLY 2720
WD40-rpts
Query 2721 SLNLAVAPLALKVPVRCVSVTKESSHILVGLEDGKLIVVGAGKPEEVRSGQFSRRLWGSTRRISQVSSGETEYNPVEAPA 2800
WD40-rpts (_________________WD 3________________)
Query 2801 K 2801
WD40-rpts
 3 WD40-repeats found in QUERY=ENSDARP00000038543 (Len=2801): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 26 2536-2574 6.53 384.50 0.00041 30.0% 57.35 WD 2: Seg 30 2587-2625 4.77 311.89 0.00389 35.0% 52.84 WD 3: Seg 42 2722-2760 3.54 260.82 0.01887 20.0% 47.61Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2536-2574 AKLVGRICRHIDVVTCLALDLCGIYLISGSRDTTCMVWQ WD 2 2587-2625 PRPIQVLCGHDQEVTCVAISTELDMAISGSKDGTVIVHS WD 3 2722-2760 LNLAVAPLALKVPVRCVSVTKESSHILVGLEDGKLIVVG WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |