Input parameters:

  Query = ENSDARP00000038728 (Len=347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000038728, Len=347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIEPKKRVADMAVVPVGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVYCCKFHPNGATLASSGYDRLI 80  
WD40-rpts      (_________________WD 1________________)      (_________________WD 2_____________

Query       81 LMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTDKTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTG 160 
WD40-rpts      ___)    (_________________WD 3________________)   (_________________WD 4________

Query      161 SDDGTVKLWDIRKKASVHTFQNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL 240 
WD40-rpts      _________)(__________________WD 5_________________)   (_________________WD 6____

Query      241 LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYIWDTTTRRIVYKLPGHAGSV 320 
WD40-rpts      ____________)       (___________________WD 7__________________)   (_____________

Query      321 NEVAFHPEEPIVLSGSSDKRLYIGEIQ 347 
WD40-rpts      ____WD 8________________)  

8 WD40-repeats found in QUERY=ENSDARP00000038728 (Len=347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.82  396.18  0.00028        7.5%     38.30
  WD 2:  Seg  4    46-84       8.71  474.51  2.5e-05       32.5%     51.72
  WD 3:  Seg  8    89-127      9.76  517.86  6.5e-06       40.0%     56.86
  WD 4:  Seg 12   131-170      9.32  499.70  1.1e-05       47.5%     54.02
  WD 5:  Seg 16   171-211      8.37  460.21  3.9e-05       32.5%     51.29
  WD 6:  Seg 20   215-253     10.28  539.49  3.3e-06       37.5%     53.36
  WD 7:  Seg 24   261-303      8.05  447.18  5.8e-05       27.5%     55.86
  WD 8:  Seg 28   307-345      9.46  505.55  9.5e-06       27.5%     52.25

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MIE-PKKRV-ADM----AVVPVGVKRPRTELVA-AAQSQQLSAMGP
   WD 2   46-84     -QAPIMLLS-GHE----GEVYCCKFHPNGATLA-SSGYDRLILMWN
   WD 3   89-127    -CENYATLK-GHS----GAVMELHYNTDGSLLF-SASTDKTVCVWD
   WD 4  131-170    -GERVKRLK-GHT----SFVNSCFPARRGPQLACTGSDDGTVKLWD
   WD 5  171-211    IRKKASVHTFQNT----YQVLSVTFNDTSDQII-SGGIDNDIKVWD
   WD 6  215-253    -NKLIYSMQ-GHG----DSVTGLSLSADGSYLL-SNSMDNSVRVWD
   WD 7  261-303    -ERCVKIFQ-GNVHNFEKNLLRCSWSADGSKIA-AGSADRFVYIWD
   WD 8  307-345    -RRIVYKLP-GHA----GSVNEVAFHPEEPIVL-SGSSDKRLYIGE

   WD40 Template    TGECLRTLS-GHT----SGVTSVSFSPDGKRLV-SGSEDGTIKVWD