Input parameters:

  Query = ENSDARP00000039795 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000039795, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LSSLVISEMIRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSAFCAVNPKFVAIIVEASGGGAFLVLPLQKTGRIDK 80  
WD40-rpts                                                                                    (_

Query       81 AYPTVCGHTGPVLDIDWCPHNDHVIASGSEDCTVMVWQIPENGLTSALSEPVVVLEGHSKRVGIVTWHPTARNVLLSAGC 160 
WD40-rpts      ________________WD 1_________________)          (_________________WD 2__________

Query      161 DNLIIIWNVGTGEALINLEDMHPDVIFSVCWSRNGSLICTACKDKKVRVIDPRKGKITAEKDKAHEGARPMRAIFLADGN 240 
WD40-rpts      _______)(___________________WD 3__________________)   (___________________WD 4__

Query      241 VFTTGFSRMSERQLALWNPKNMEEPISVHEMDTSNGVLLPFYDPDTNVVYLCGKGDSSIRYFEITDEAPYVHYLNTFSSK 320 
WD40-rpts      _________________)(____________________WD 5___________________)(________________

Query      321 EPQRGMGYMPKRGLDVNKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPDPVLEAEEWFEGKNGEPILISLK 400 
WD40-rpts      ___WD 6__________________)                                                      

Query      401 HGYVPGKNRDLKVVKKNVLDNKATKKVEEPTTPQKPASPQLTRKNEVKLEELLREVKSLRDLVTLQDRRIAKLEEQVSKV 480 
WD40-rpts                                                                                      

Query      481 AI 482 
WD40-rpts        

6 WD40-repeats found in QUERY=ENSDARP00000039795 (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    79-118      7.67  431.36  9.6e-05       35.0%     46.05
  WD 2:  Seg 10   129-168      6.85  397.50  0.00027       30.0%     49.94
  WD 3:  Seg 14   169-211      7.39  420.06  0.00014       22.5%     52.99
  WD 4:  Seg 18   215-258      3.83  272.82  0.01304       17.5%     43.95
  WD 5:  Seg 22   259-303      4.44  297.86  0.00601       20.0%     40.17
  WD 6:  Seg 26   304-346      3.96  278.13  0.01107       10.0%     37.45

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   79-118    -D---K---AYPTVC----GHTGP--VLDIDWCPHNDHV-I-ASG---SEDCTVMVWQ
   WD 2  129-168    -S---E---PVVVLE----GHSKR--VGIVTWHP-TARNVL-LSA---GCDNLIIIWN
   WD 3  169-211    VGTGEA---LINLED----MHPDV--IFSVCWSR-NGSL-I-CTA---CKDKKVRVID
   WD 4  215-258    -G---K---ITAEKD----KAHEGARPMRAIFLA-DGNV-F-TTGFSRMSERQLALWN
   WD 5  259-303    PK---N---MEEPISVHEMDTSNG--VLLPFYDP-DTNV-VYLCG---KGDSSIRYFE
   WD 6  304-346    IT---DEAPYVHYLN----TFSSK--EPQRGMGY-MPKR-G-LDV---NKCEIARFYK

   WD40 Template    TG---E---CLRTLS----GHTSG--VTSVSFSP-DGKR-L-VSG---SEDGTIKVWD