Input parameters:
Query = ENSDARP00000040775 (Len=806)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000040775, Len=806):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPAFRQVGEKQLPNPILYMAWCPKRDLIALANTTGELLLHRLANFHRVWSLPPNENTGKEITSLAWRPDGKVLAFSVGDT 80
WD40-rpts (____________________WD 1_____________
Query 81 KQVVLCDAEKAEILHLFPVEYPASCMHWMEVQDDSSTLTSFSESEDESSRFLPKLPTLPKSYSTTSKIFSEEKSEEVTNL 160
WD40-rpts ______)
Query 161 LGEVRLNILVVGGPSGFVELYAYGLYKIATLSGILGTCRSLGLSSDLKSLSVITEIRSTDDNPEIRYIQLDTGLLSSCLP 240
WD40-rpts
Query 241 ELTKMARKFTHISTLLQYLRVSLTCMCEAWEEILMQMDLRLTKFVQEKNTSTQVQDEFLELLLWGHASPELQALLMNQLT 320
WD40-rpts
Query 321 VKGLKMLGQSIDSSYSSIQKLVISHLQSGSEALLYHLSEVKGMALWKQKFQPLGLDPSDIEDAIVAVGSFTLKASELLQV 400
WD40-rpts
Query 401 IDKSMKNFKAFFRWLYVAMLRMSEDHVPPELNKMTQKDLAFVADFLSEHFSANEELFDRKGKYFNVERVGQYLKDEDEDL 480
WD40-rpts
Query 481 VSPPNMDGNQWVTFVKQSTHLKDSPLLFPTYPQKSLHFVKRLMEASIDLCLQKPAAVIGDSVKQAVCLRLYTVPESSENT 560
WD40-rpts
Query 561 PRLFELPSLWNDKKAAMHYVVFCMPEISPSKIYILRRPTDPNRSVPNGLVALNLNTPLNSSIDDETPAPASVDYSYSCLD 640
WD40-rpts
Query 641 ARFYDDETLTVVLRRLEDDENKMRVLAQLPLNSAMSWDEEFSWDLSLRLEQQTEGIPVQGVAWGNQSREMDNISAQFVAV 720
WD40-rpts
Query 721 NGIRKVACVLSANLRHVRVFEMDAEEEEDEEERADESQEMSSDQDRIEDTKTNESDAVEGGRVEDAQVSGQGPRDSLDDT 800
WD40-rpts
Query 801 AGSDTL 806
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000040775 (Len=806):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 43-87 3.57 262.06 0.01816 25.0% 44.06
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 43-87 ANFHRVWSLPPNENTGKEITSLAWRPDGKVLAFSVGDTKQVVLCD
WD40 Template TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD