Input parameters:
Query = ENSDARP00000042217 (Len=410)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000042217, Len=410):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEIN 80
WD40-rpts
Query 81 IGGPIGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDH 160
WD40-rpts (_________________WD 1________________) (_________________WD
Query 161 TGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV 240
WD40-rpts 2________________) (_________________WD 3________________) (________________
Query 241 RPNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTI 320
WD40-rpts _WD 4________________) (___________________________WD 5_______________________
Query 321 KMWDVSIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDYKNKRCTKTLSAHEHFVTSLDFHKTAPYVVTGSV 400
WD40-rpts ___) (_________________WD 6________________) (_________________WD 7_________
Query 401 DQTVKVWECR 410
WD40-rpts _______)
7 WD40-repeats found in QUERY=ENSDARP00000042217 (Len=410):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 98-136 10.34 541.75 3.1e-06 52.5% 48.55
WD 2: Seg 6 140-178 10.77 559.36 1.8e-06 52.5% 56.27
WD 3: Seg 10 182-220 10.96 567.36 1.4e-06 47.5% 57.12
WD 4: Seg 14 224-262 10.24 537.67 3.5e-06 37.5% 54.42
WD 5: Seg 18 266-324 7.83 437.97 7.8e-05 45.0% 54.42
WD 6: Seg 22 328-366 10.69 556.30 2.0e-06 45.0% 56.69
WD 7: Seg 26 370-408 10.19 535.64 3.8e-06 42.5% 55.07
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 98-136 PPEKYALSGHRSPVTRVIFHPV--------------------FSVIVSASEDATIKVWD
WD 2 140-178 GDFERTLKGHTDSVQDISFDHT--------------------GKLLASCSADMTIKLWD
WD 3 182-220 FECIRTMHGHDHNVSSVAIMPN--------------------GDHIVSASRDKTIKMWE
WD 4 224-262 GYCVKTFTGHREWVRMVRPNQD--------------------GTLIASSSNDQTVRVWV
WD 5 266-324 KECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWD
WD 6 328-366 GMCLMTLVGHDNWVRGVLVHPG--------------------GKYIVSCADDKTLRIWD
WD 7 370-408 KRCTKTLSAHEHFVTSLDFHKT--------------------APYVVTGSVDQTVKVWE
WD40 Template GECLRTLSGHTSGVTSVSFSPD--------------------GKRLVSGSEDGTIKVWD