Input parameters:

  Query = ENSDARP00000043116 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000043116, Len=392):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVFQLPEDVLFLVLSYLDPKSLCRFSQTCRRSYQFISRDAVWRRIAKDMINTGLTRQGIDLCHSVPLKDRVRVSHNWTH 80  
WD40-rpts                                                                                      

Query       81 GVCRKEILLKWKINLLPWIQLDCDVLYLSQAANISAYHLRADGGKLQNSRVALFSGHQEDVCRFTLTDTHLISAGGDGKI 160 
WD40-rpts        (_________________WD 1________________)      (________________WD 2____________

Query      161 IVHDRGSDYSVVFYGHNQEVNCIDCKGAVIVSGSRDKSAKIWALTPDRFGQCLHTIPTYDRVWSVAISPSLGTFVTGTAC 240 
WD40-rpts      ___)(_________________WD 3________________)      (__________________WD 4________

Query      241 CENFAPLRIWDTERCHLVSCLGTEFRRGAGVLDIIYESPFQLLTCGYDTFIRYWDLRVCSRKCVMEWEEPHDSALYCIKT 320 
WD40-rpts      __________)      (________________WD 5________________)(____________________WD 6

Query      321 DRNHMIASGSSYYGVVRLWDKRQTRCLQMFQLAPTTSSPVYSLCFNTTHLYAALASVLYSLDFRNAGSQSWK 392 
WD40-rpts      ___________________)   (__________________WD 7__________________)       

7 WD40-repeats found in QUERY=ENSDARP00000043116 (Len=392):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    83-121      4.72  309.81  0.00415        7.5%     34.43
  WD 2:  Seg  6   128-164      6.98  403.02  0.00023       30.0%     49.98
  WD 3:  Seg 10   165-203      7.20  412.09  0.00017       30.0%     46.51
  WD 4:  Seg 14   210-251      6.89  399.13  0.00026       32.5%     54.73
  WD 5:  Seg 18   258-295      7.09  407.51  0.00020       25.0%     42.15
  WD 6:  Seg 22   296-340      7.88  440.11  7.3e-05       17.5%     51.57
  WD 7:  Seg 26   344-385      6.93  400.89  0.00025       17.5%     49.91

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   83-121    -C-RK-----EILLK---WKINLLPWIQLDCDVLYLSQAA----NISAYHLRA
   WD 2  128-164    -N-SR-----VALFS---GHQEDV--CRFTLTDTHLISAG----GDGKIIVHD
   WD 3  165-203    RGSDY-----SVVFY---GHNQEVNCI--DCKGAVIVSGS----RDKSAKIWA
   WD 4  210-251    -G-QC-----LHTIP---TY-DRVWSVAISPSLGTFVTGTACCENFAPLRIWD
   WD 5  258-295    -V-SC-----LGTEF---RRGAGVLDIIYESPFQ-LLTCG----YDTFIRYWD
   WD 6  296-340    LR-VCSRKCVMEWEE---PHDSALYCIKTDRNHMIASGSS----YYGVVRLWD
   WD 7  344-385    -T-RC-----LQMFQLAPTTSSPVYSLCFNTTHLYAALAS----VLYSLDFRN

   WD40 Template    TG-EC-----LRTLS---GHTSGVTSVSFSPDGKRLVSGS----EDGTIKVWD