Input parameters:

  Query = ENSDARP00000045879 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000045879, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRVDKNYPLVVGHSGPVLDIDWCPHNDNILASCSEDTTAMVWQIPDHTPSRPISEPIVVLEGHSKRVGIIKWHPTARNI 80  
WD40-rpts      (___________________WD 1___________________)          (_________________WD 2____

Query       81 LLTAGSDNLIIIWNVGTGEALITMDDHPDLIYSVGWNYNGSLFCTTCKDRRLRVCDPRKNEVVAERLSPHEGIRPMRAIF 160 
WD40-rpts      _____________)   (_________________WD 3________________)   (___________________W

Query      161 TREGNIFTTGFTRMSQRELGLWDPTNFEEPIALLELDTSNGVLLPFYDPDTNIVYLSGKGDSSIRYFEITEEPPYVHYIS 240 
WD40-rpts      D 4___________________)(____________________WD 5___________________) (__________

Query      241 TFSSKEPQRGMGFMPKRGVDVSKCEIARLYKLHERKCEPIMMTVPRKSDLFQDDLFPDTAGPDPAVEPEEWMDGRDADPI 320 
WD40-rpts      ________WD 6__________________)                                                 

Query      321 LVSMRDGYVPPKSRELKVSKKNVLDSRPATRRSMSAVDGSSLPVRHSVSW 370 
WD40-rpts                                                        

6 WD40-repeats found in QUERY=ENSDARP00000045879 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       7.94  442.81  6.7e-05       32.5%     45.96
  WD 2:  Seg  5    55-94       7.16  410.27  0.00018       25.0%     51.44
  WD 3:  Seg  9    98-136      8.84  479.93  2.1e-05       27.5%     55.83
  WD 4:  Seg 13   140-183      3.96  278.34  0.01099       17.5%     49.07
  WD 5:  Seg 17   184-228      5.03  322.25  0.00282       20.0%     41.65
  WD 6:  Seg 21   230-271      3.03  240.01  0.03569       20.0%     34.39

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MGR--VDKNYPLVV----GHSGP--VLDIDWCPHNDNI-L-ASCS---EDTTAMVWQ
   WD 2   55-94     -SE--P---IVVLE----GHSKR--VGIIKWHP-TARNIL-LTAG---SDNLIIIWN
   WD 3   98-136    -GE--A---LITMD----DHPDL--IYSVGWNY-NGSL-F-CTTC---KDRRLRVCD
   WD 4  140-183    -NE--V---VAERL----SPHEGIRPMRAIFTR-EGNI-F-TTGFTRMSQRELGLWD
   WD 5  184-228    PTN--F---EEPIALLELDTSNG--VLLPFYDP-DTNI-VYLSGK---GDSSIRYFE
   WD 6  230-271    TEEPPY---VHYIS----TFSSK--EPQRGMGF-MPKR-G-VDVS---KCEIARLYK

   WD40 Template    TGE--C---LRTLS----GHTSG--VTSVSFSP-DGKR-L-VSGS---EDGTIKVWD