Input parameters:

  Query = ENSDARP00000047739 (Len=508)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000047739, Len=508):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGHPSDNEEPRADLLREEEEEEEEEEDSDEDRGSTRPASPQATRECAGTQGSSRPEVTADGGTGSASGSGCRGSGACD 80  
WD40-rpts                                               (_________________WD 1________________)

Query       81 SLFSWICRRKIRRGPYVDPARDHFRTMTRLYSSMSPAADSVNLSTQTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPVSS 160 
WD40-rpts                                              (_______________WD 2_______________)    

Query      161 RHIKTLVEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNSKVCSLHGHASWVKNIEYDTHTRLLVTSGFDGNVITW 240 
WD40-rpts      (________________WD 3________________)    (_________________WD 4________________

Query      241 DTNRFTEDGCPHKKFFHTRYLMRMRLTPDCSKMLISTSSGYLLILHDLDLTQSLEVGSYRILRARRPPLSTEGSSAGSRS 320 
WD40-rpts      )      (_________________WD 5_________________)   (_________________WD 6________

Query      321 GGPRHTIDNKNHPHREGLSPRNSLEVLTPEIPGERDRGNCITSLQLHPKGWATLLRCSSNMDDQEWTCVYEFQEGAPPRP 400 
WD40-rpts      ________)(__________________________WD 7__________________________)             

Query      401 PVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRLICSPYGYGVRLLAFDENCAELVDCMPVRTAQLREVRSIYSHSDVV 480 
WD40-rpts                (________________WD 8________________)                  (_____________

Query      481 LTSKFSPTHCQFASGCLSGRVALYQPHF 508 
WD40-rpts      ____WD 9________________)   

9 WD40-repeats found in QUERY=ENSDARP00000047739 (Len=508):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    42-80       6.14  368.10  0.00068       17.5%     -5.22
  WD 2:  Seg  5   121-156      8.00  445.09  6.2e-05       20.0%     46.45
  WD 3:  Seg  8   161-198      6.78  394.68  0.00030       25.0%     51.35
  WD 4:  Seg 12   203-241      9.27  497.43  1.2e-05       27.5%     52.62
  WD 5:  Seg 16   248-287      7.17  411.03  0.00018       25.0%     49.56
  WD 6:  Seg 20   291-329      6.44  380.83  0.00046       15.0%     52.20
  WD 7:  Seg 24   330-387      5.35  335.70  0.00186       17.5%     40.71
  WD 8:  Seg 27   411-448      5.83  355.51  0.00101       15.0%     45.47
  WD 9:  Seg 32   467-505      8.41  462.15  3.7e-05       22.5%     51.60

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-80     -PQ-----------------ATRECAGTQGSSRPEVTADGG-TGSASGSGCRGSGACD
   WD 2  121-156    ---------------------VNLSTQTHGAVFNLEYSPDG-SVLTVACEQTEVLLFD
   WD 3  161-198    -RH-----------------IKTLVEAHEDCVNNIRFL-DN-RLFATCSDDTTIALWD
   WD 4  203-241    -NS-----------------KVCSLHGHASWVKNIEYDTHT-RLLVTSGFDGNVITWD
   WD 5  248-287    -DG-----------------CPHKKFFHTRYLMRMRLTPDCSKMLISTSSGYLLILHD
   WD 6  291-329    -TQ-----------------SLEVGSYRILRARRPPLSTEG-SSAGSRSGGPRHTIDN
   WD 7  330-387    KNHPHREGLSPRNSLEVLTPEIPGERDRGNCITSLQLHPKGWATLLRCSSNMDDQEWT
   WD 8  411-448    -TH-----------------YIEEANVGRGYIKELCFSPDG-RLICSPY-GYGVRLLA
   WD 9  467-505    -LR-----------------EVRSIYSHSDVVLTSKFSPTH-CQFASGCLSGRVALYQ

   WD40 Template    TGE-----------------CLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD