Input parameters:

  Query = ENSDARP00000048143 (Len=424)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000048143, Len=424):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSVHRLVLGTHTSDEQNHLV 80  
WD40-rpts                                                                                      

Query       81 IASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSK 160 
WD40-rpts                                               (_____________WD 1_____________)       

Query      161 PDPSGECTPDLRLRGHQKEGYGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE 240 
WD40-rpts            (_________________WD 2_________________)         (__________________WD 3__

Query      241 SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 320 
WD40-rpts      _______________)      (_________________WD 4_________________)(_________________

Query      321 FQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400 
WD40-rpts      __WD 5___________________)                 (_________________WD 6_______________

Query      401 VWQMAENIYNDEDPEGAADTEVQG 424 
WD40-rpts      __)                     

6 WD40-repeats found in QUERY=ENSDARP00000048143 (Len=424):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   122-153      3.30  251.12  0.02541       12.5%     43.46
  WD 2:  Seg  8   167-206      5.89  358.02  0.00093       32.5%     50.68
  WD 3:  Seg 12   216-256      7.73  433.98  8.8e-05       27.5%     45.15
  WD 4:  Seg 15   263-302      7.23  413.39  0.00017       32.5%     53.86
  WD 5:  Seg 19   303-346      6.80  395.68  0.00029       27.5%     51.35
  WD 6:  Seg 23   364-403      5.79  353.79  0.00106       32.5%     54.93

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-153    ------------NHEGEVNRARYMPQ-NPCI-I-ATKTPTSDVLVFD
   WD 2  167-206    -CTP---DLRLRGHQKEGYGLSWNPNLSG-C-L-LSASDDHTICLWD
   WD 3  216-256    IVDA---KTIFTGHTAVVEDVSWHLL-HE-S-LFGSVADDQKLMIWD
   WD 4  263-302    -SKP---SHAVDAHTAEVNCLSFNPY-SEFI-L-ATGSADKTVALWD
   WD 5  303-346    LRNLKLKLHSFESHKDEIFQVQWSPH-NE-TIL-ASSGTDRRLNVWD
   WD 6  364-403    -PEL---LFIHGGHTAKISDFSWNPN-EPWV-I-CSVSEDNIMQVWQ

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSPD-GK-R-L-VSGSEDGTIKVWD