Input parameters:

  Query = ENSDARP00000048276 (Len=1224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000048276, Len=1224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNLSPGAVDTEVRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW 240 
WD40-rpts      __)                            (__________________WD 5__________________)(______

Query      241 ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAHPNLNLFAAGHDSGMLVFKLE 320 
WD40-rpts      _____________WD 6___________________)(__________________WD 7_________________)  

Query      321 RERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRES 400 
WD40-rpts                                 (___________________WD 8__________________)          

Query      401 DSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDAEGVTLFDVQQK 480 
WD40-rpts                                                                                      

Query      481 RSLATVKIAKVKYVVWSSDANHVALLAKHAIMICNKKLESLCNIHENIRVKSGAWAENEVFIYTTSNHIKYALTSGDHGI 560 
WD40-rpts                                                                                      

Query      561 IRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFKLALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALH 640 
WD40-rpts                                                                                      

Query      641 FVKDEKTRFSLALECGNIEVALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLTKLRKMM 720 
WD40-rpts                                                                                      

Query      721 KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDLEKEMVPEVDPNAQLLQPPPP 800 
WD40-rpts                                                                                      

Query      801 INPLDTNWPLLTVSKGFFEGAIAAKGRAGQMVADLDMDAPGGEGWGEDAELHLDEDGFMDAQEGLGDEGAIGKDDGGGWD 880 
WD40-rpts                                                                                      

Query      881 VEEDLDLPPELDVPSVGGGGAEGEGFFVPPTKGTSPTQMWCNNSQLSVDHILAGSFETAMRLLHDQVGVVQFGPYKQLFM 960 
WD40-rpts                                                                                      

Query      961 QTLSRGRTCYLGLPSLPCLHSFPLRNWKDSGPKGGLPAVGLRLADLISRLQQCYQLTTSGRFEDAVERFRAILLSVPLLV 1040
WD40-rpts                                                                                      

Query     1041 VDNKQEIAEAQQLITICKEYIIGLTMETERKKLPKDSLDEQKRICEMAAYFTHCSLQPVHMVLVLRTALNLFFKLRNFKT 1120
WD40-rpts                                                                                      

Query     1121 AAGFARRLLELGPKPEVAQQTRKILSACEKSLTDAHQLNYDPHNPFDICAASYTPLYRGRPVEKCPLSGACYCPKYKGEV 1200
WD40-rpts                                                                                      

Query     1201 CRVTQVTEIGKDVIGLRVSPLQFR 1224
WD40-rpts                              

8 WD40-repeats found in QUERY=ENSDARP00000048276 (Len=1224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.06  323.65  0.00270       22.5%     46.69
  WD 2:  Seg  4    41-79       7.16  410.32  0.00018       27.5%     56.63
  WD 3:  Seg  8    83-121      8.28  456.56  4.4e-05       32.5%     56.46
  WD 4:  Seg 12   125-163      8.75  476.20  2.4e-05       37.5%     56.14
  WD 5:  Seg 19   192-233      8.48  464.78  3.4e-05       32.5%     56.14
  WD 6:  Seg 23   234-277      8.42  462.36  3.6e-05       40.0%     49.42
  WD 7:  Seg 27   278-318      3.00  238.72  0.03712       12.5%     57.48
  WD 8:  Seg 34   348-390      3.49  258.74  0.02011       15.0%     34.95

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ------M----LTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWD
   WD 2   41-79     -CT---L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR---C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWN
   WD 4  125-163    -RT---C----VCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWD
   WD 5  192-233    ASD-AVV----KHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWR
   WD 6  234-277    MNE---SKAWELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
   WD 7  278-318    MSK-RTG----VQTFRRDHDRFWVLGAHPNLNLFAAGH-DSGMLVFK
   WD 8  348-390    SSKDTAV----MQLRSGSKFPVFSMSYNPAENAVLLCTRATNLENST

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD