Input parameters:

  Query = ENSDARP00000051230 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000051230, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80  
WD40-rpts                                        (______________________WD 1___________________

Query       81 IWDSYTTNKIHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFIDDNQIITS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQTTLFSGHSGDVMSLSLAPDSRTFISGACDASIKLWDIRDSMCRQTFTGHESDINAACFFPSGSA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 FATGSDDATCRLFDLRADQELCLYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGERAGVLAGHDNRVSCLGV 320 
WD40-rpts      _____________)(___________________WD 6___________________)   (_________________W

Query      321 TDDGMAVCTGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSDARP00000051230 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-83       9.71  515.76  7.0e-06       37.5%     48.51
  WD 2:  Seg  7    87-125      8.81  478.39  2.2e-05       15.0%     56.73
  WD 3:  Seg 11   133-170      7.15  410.21  0.00018       30.0%     51.30
  WD 4:  Seg 15   174-212     10.40  544.45  2.9e-06       40.0%     55.26
  WD 5:  Seg 19   216-254     10.22  536.64  3.6e-06       32.5%     53.23
  WD 6:  Seg 23   255-298      9.12  491.24  1.5e-05       35.0%     56.08
  WD 7:  Seg 27   302-340      9.93  525.04  5.2e-06       32.5%     50.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-83     AGLDPVGRIQMR----TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2   87-125    -T---------N----KIHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 3  133-170    -V---------R----VSRELPGHTGYLSCCRFIDDNQ-IITSSGDTTCALWD
   WD 4  174-212    -G---------Q----QTTLFSGHSGDVMSLSLAPDSRTFISGACDASIKLWD
   WD 5  216-254    -S---------M----CRQTFTGHESDINAACFFPSGSAFATGSDDATCRLFD
   WD 6  255-298    LR---------ADQELCLYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD
   WD 7  302-340    -G---------E----RAGVLAGHDNRVSCLGVTDDGMAVCTGSWDSFLKIWN

   WD40 Template    TG---------E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD